1duq: Difference between revisions
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<StructureSection load='1duq' size='340' side='right'caption='[[1duq]], [[Resolution|resolution]] 2.10Å' scene=''> | <StructureSection load='1duq' size='340' side='right'caption='[[1duq]], [[Resolution|resolution]] 2.10Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[1duq]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DUQ OCA]. For a <b>guided tour on the structure components</b> use [ | <table><tr><td colspan='2'>[[1duq]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DUQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DUQ FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1duq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1duq OCA], [https://pdbe.org/1duq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1duq RCSB], [https://www.ebi.ac.uk/pdbsum/1duq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1duq ProSAT]</span></td></tr> | ||
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
Revision as of 21:35, 10 March 2021
CRYSTAL STRUCTURE OF THE REV BINDING ELEMENT OF HIV-1CRYSTAL STRUCTURE OF THE REV BINDING ELEMENT OF HIV-1
Structural highlights
Publication Abstract from PubMedThe crystal and molecular structure of an RNA duplex corresponding to the high affinity Rev protein binding element (RBE) has been determined at 2.1-A resolution. Four unique duplexes are present in the crystal, comprising two structural variants. In each duplex, the RNA double helix consists of an annealed 12-mer and 14-mer that form an asymmetric internal loop consisting of G-G and G-A noncanonical base pairs and a flipped-out uridine. The 12-mer strand has an A-form conformation, whereas the 14-mer strand is distorted to accommodate the bulges and noncanonical base pairing. In contrast to the NMR model of the unbound RBE, an asymmetric G-G pair with N2-N7 and N1-O6 hydrogen bonding, is formed in each helix. The G-A base pairing agrees with the NMR structure in one structural variant, but forms a novel water-mediated pair in the other. A backbone flip and reorientation of the G-G base pair is required to assume the RBE conformation present in the NMR model of the complex between the RBE and the Rev peptide. The crystal structure of the Rev binding element of HIV-1 reveals novel base pairing and conformational variability.,Hung LW, Holbrook EL, Holbrook SR Proc Natl Acad Sci U S A. 2000 May 9;97(10):5107-12. PMID:10792052[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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