Gp120: Difference between revisions

No edit summary
Michal Harel (talk | contribs)
No edit summary
Line 19: Line 19:
{{#tree:id=OrganizedByTopic|openlevels=0|
{{#tree:id=OrganizedByTopic|openlevels=0|


*Gp120 from HIV-1
*Gp120 from HIV-1; Domains – Clade A/E 1-140; outer – 1-181; RHPA 1-216; V1-V2 118-246; V3 296-331; core 44-492; C5 484-506


**[[3dnl]], [[3dnn]], [[3dno]], [[3tgq]], [[3tgr]], [[3tgt]], [[3tih]] - Gp120 core<br />
**[[3dnl]], [[3dnn]], [[3dno]], [[3tgq]], [[3tgr]], [[3tgt]], [[3tih]], [[5f4u]] - Gp120 core<br />
**[[5fa2]] - Gp120 core (mutant)<br />
**[[1meq]] – GP120 C5 domain – NMR<br />
**[[1meq]] – GP120 C5 domain – NMR<br />
**[[1niz]], [[1nj0]], [[2esx]], [[2esz]], [[1u6u]], [[1u6v]] - GP120 V3 loop – NMR<br />
**[[1niz]], [[1nj0]], [[2esx]], [[2esz]], [[1u6u]], [[1u6v]] - GP120 V3 loop – NMR<br />
**[[4jpj]], [[5idl]] - Gp120 outer domain<br />
**[[4jpj]], [[5idl]] - Gp120 outer domain<br />
**[[5fa2]] - Gp120 core (mutant)<br />
**[[5f4u]] - Gp120 Clade C <br />


*Gp120 binary complex
*Gp120 binary complex
 
>
**[[3se8]], [[3se9]], [[3hi1]], [[3rjq]], [[4jkp]], [[4jm2]], [[4lss]], [[4lsv]], [[4ywg]], [[4xvs]], [[3ngb]], [[4ye4]], [[4rwy]], [[4jan]], [[4lst]], [[5te7]], [[5f6j]], [[5te4]] - Gp120 + antibody<br />
**[[3idx]], [[3idy]], [[2ny7]]. [[4jdt]], [[5fyl]], [[5fec]] - Gp120 core (mutant) + antibody <br />
**[[3idx]], [[3idy]], [[2ny7]]. [[4jdt]], [[5fyl]], [[5fec]] - Gp120 core (mutant) + antibody <br />
**[[3se8]], [[3se9]], [[3hi1]], [[3rjq]], [[4jkp]], [[4jm2]], [[4lss]], [[4lsv]], [[4ywg]], [[4xvs]] - Gp120 + antibody<br />
**[[4rz8]], [[5f4l]], [[5f4p]], [[5f4r]] - Gp120 core + CD4 mimic <br />
**[[4rz8]] - Gp120 core + CD4 mimic <br />
**[[4dku]], [[4dkv]] - Gp120 core (mutant) + CD4 mimetic<br />
**[[3ngb]] - Gp120 + antibody VRC01<br />
**[[4jzw]], [[4jzz]], [[4k0a]], [[4ka2]] - Gp120 core + CD4 mimetic miniprotein<br />
**[[4i3r]], [[4i3s]], [[5kzc]], [[5if0]], [[5ies]] - Gp120 outer domain + antibody VRC<br />
**[[4i3r]], [[4i3s]], [[5kzc]], [[5if0]], [[5ies]], [[4jpj]] - Gp120 outer domain + antibody<br />
**[[4ye4]], [[4rwy]] - Gp120 Clade B + antibody <br />
**[[4jan]], [[4lst]], [[5te7]], [[5f6j]] - Gp120 Clade C + antibody <br />
**[[5f4l]], [[5f4p]], [[5f4r]] - Gp120 Clade C + CD4 mimic <br />
**[[4jb9]], [[4lsp]], [[4lsq]], [[4lsr]], [[4lsu]], [[5te6]], [[5fcu]], [[5f9w]], [[5f9o]], [[5f96]], [[5cd5]], [[4xvt]] - Gp120 Clade A/E + antibody <br />
**[[4jb9]], [[4lsp]], [[4lsq]], [[4lsr]], [[4lsu]], [[5te6]], [[5fcu]], [[5f9w]], [[5f9o]], [[5f96]], [[5cd5]], [[4xvt]] - Gp120 Clade A/E + antibody <br />
**[[4yc2]], [[4ybl]], [[4s1s]], [[4s1r]], [[4s1q]] - Gp120 Clade A/E (mutant) + antibody <br />
**[[4yc2]], [[4ybl]], [[4s1s]], [[4s1r]], [[4s1q]] - Gp120 Clade A/E (mutant) + antibody <br />
**[[4jpj]], [[4rx4]] - Gp120 Clade A + antibody <br />
**[[4jpj]], [[4rx4]] - Gp120 Clade A + antibody <br />
**[[4jpw]] - Gp120 Clade A (mutant) + antibody <br />
**[[5te4]] - Gp120 Clade G + antibody <br />
**[[5t33]] - Gp120 RHPA + antibody <br />
**[[5t33]] - Gp120 RHPA + antibody <br />
**[[3u2s]] - Gp120 V1V2 region + antibody PG9<br />
**[[3u2s]] - Gp120 V1V2 region + antibody PG9<br />
**[[3tgs]], [[4dko]], [[4dkp]], [[4dkq]], [[4dkr]] - Gp120 core + piperidine derivative<br />
**[[3tgs]], [[4dko]], [[4dkp]], [[4dkq]], [[4dkr]] - Gp120 core + piperidine derivative<br />
**[[4dku]], [[4dkv]] - Gp120 core (mutant) + CD4 mimetic<br />
**[[5u6e]] - Gp120 core + pyrrole derivative<br />
**[[4jzw]], [[4jzz]], [[4k0a]], [[4ka2]] - Gp120 core + CD4 mimetic miniprotein<br />


*Gp120 ternary complex
*Gp120 ternary complex


**[[3jwd]], [[3jwo]], [[2i5y]], [[2i60]] - Gp120 core + hCD4 N terminal + antibody <br />
**[[2nxy]], [[2nxz]], [[2ny0]], [[2ny1]], [[2ny2]], [[2ny3]], [[2ny4]], [[2ny5]], [[2ny6]], [[1gc1]], [[1g9m]], [[1g9n]], [[1rzj]], [[1rzk]], [[1yyl]], [[1yym]], [[2b4c]] - Gp120 core (mutant) + hCD4 N terminal + antibody <br />
**[[2nxy]], [[2nxz]], [[2ny0]], [[2ny1]], [[2ny2]], [[2ny3]], [[2ny4]], [[2ny5]], [[2ny6]], [[1gc1]], [[1g9m]], [[1g9n]], [[1rzj]], [[1rzk]], [[1yyl]], [[1yym]], [[2b4c]] - Gp120 core (mutant) + hCD4 N terminal + antibody <br />
**[[3jwd]], [[3jwo]], [[2i5y]], [[2i60]] - Gp120 core + hCD4 N terminal + antibody <br />
**[[5a8h]], [[5a7x]], [[4rqs]], [[4r4h]], [[4r2g]], [[4p9h]] - Gp120 core + hCD4 D1-D2 domain + antibody<br />
**[[5a8h]], [[5a7x]], [[4rqs]], [[4r4h]], [[4r2g]], [[4p9h]] - Gp120 core + hCD4 D1-D2 domain + antibody<br />
**[[4laj]] - Gp120 core + CD4 mimetic miniprotein + antibody<br />
**[[4laj]] - Gp120 core + CD4 mimetic miniprotein + antibody<br />
Line 58: Line 52:
**[[5kjr]] - Gp120 Clade A/E + M48U1 peptide + antibody<br />
**[[5kjr]] - Gp120 Clade A/E + M48U1 peptide + antibody<br />
**[[4rfo]], [[4rfn]] - Gp120 Clade A/E (mutant) + M48U1 peptide + antibody<br />
**[[4rfo]], [[4rfn]] - Gp120 Clade A/E (mutant) + M48U1 peptide + antibody<br />
**[[5v8l]], [[5v8m]], [[5uty]], [[5utf]], [[5um8]], [[5jsa]], [[5js9]], [[5i8h]], [[5d9q]], [[5cjx]], [[5c7k]], [[6ccb]] - Gp120 + Gp41 + antibody<br />
**[[5v8l]], [[5v8m]], [[5uty]], [[5utf]], [[5um8]], [[5jsa]], [[5js9]], [[5i8h]], [[5d9q]], [[5cjx]], [[5c7k]], [[6ccb]] - Gp120 core + Gp41 + antibody<br />
**[[6cde]], [[6cdi]] - Gp120 + Gp41 + antibody – Cryo EM<br />
**[[6cde]], [[6cdi]] - Gp120 core + Gp41 + antibody – Cryo EM<br />
**[[5fyk]], [[5fyj]], [[4nco]] - Gp120 (mutant) + Gp41 + antibody<br />
**[[5fyk]], [[5fyj]], [[4nco]] - Gp120 core (mutant) + Gp41 + antibody<br />


*Gp120 from HIV-2 binary complex
*Gp120 from HIV-2 binary complex

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Alexander Berchansky, Michal Harel, Joel L. Sussman