6igc: Difference between revisions

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-{{Large structure}}
 ==Crystal structure of HPV58/33/52 chimeric L1 pentamer==
-<StructureSection load='6igc' size='340' side='right' caption='[[6igc]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
+<StructureSection load='6igc' size='340' side='right'caption='[[6igc]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6igc]] is a 40 chain structure with sequence from [http://en.wikipedia.org/wiki/Hpv58 Hpv58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IGC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IGC FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6igc]] is a 40 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_papillomavirus_58 Human papillomavirus 58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IGC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IGC FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">L1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10598 HPV58])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6igc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6igc OCA], [http://pdbe.org/6igc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6igc RCSB], [http://www.ebi.ac.uk/pdbsum/6igc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6igc ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6igc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6igc OCA], [https://pdbe.org/6igc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6igc RCSB], [https://www.ebi.ac.uk/pdbsum/6igc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6igc ProSAT]</span></td></tr>
 </table>
-{{Large structure}}
 == Function ==
-[[http://www.uniprot.org/uniprot/VL1_HPV58 VL1_HPV58]] Forms an icosahedral capsid with a T=7 symmetry and a 50 nm diameter. The capsid is composed of 72 pentamers linked to each other by disulfide bonds and associated with L2 proteins. Binds to heparan sulfate proteoglycans on cell surface of basal layer keratinocytes to provide initial virion attachment. This binding mediates a conformational change in the virus capsid that facilitates efficient infection. The virion enters the host cell via endocytosis. During virus trafficking, L1 protein dissociates from the viral DNA and the genomic DNA is released to the host nucleus. The virion assembly takes place within the cell nucleus. Encapsulates the genomic DNA together with protein L2.[HAMAP-Rule:MF_04002]<ref>PMID:12610160</ref>
+[https://www.uniprot.org/uniprot/VL1_HPV58 VL1_HPV58] Forms an icosahedral capsid with a T=7 symmetry and a 50 nm diameter. The capsid is composed of 72 pentamers linked to each other by disulfide bonds and associated with L2 proteins. Binds to heparan sulfate proteoglycans on cell surface of basal layer keratinocytes to provide initial virion attachment. This binding mediates a conformational change in the virus capsid that facilitates efficient infection. The virion enters the host cell via endocytosis. During virus trafficking, L1 protein dissociates from the viral DNA and the genomic DNA is released to the host nucleus. The virion assembly takes place within the cell nucleus. Encapsulates the genomic DNA together with protein L2.[HAMAP-Rule:MF_04002]<ref>PMID:12610160</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 19: / Line 18: @@
 </div>
 <div class="pdbe-citations 6igc" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Hpv58]]
+[[Category: Human papillomavirus 58]]
-[[Category: Gu, Y]]
+[[Category: Large Structures]]
-[[Category: He, M Z]]
+[[Category: Gu Y]]
-[[Category: Li, S W]]
+[[Category: He MZ]]
-[[Category: Li, Z H]]
+[[Category: Li SW]]
-[[Category: Song, S]]
+[[Category: Li ZH]]
-[[Category: Capsid protein]]
+[[Category: Song S]]
-[[Category: Structural protein]]