3bto: Difference between revisions

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[[Image:3bto.gif|left|200px]]
[[Image:3bto.gif|left|200px]]


{{Structure
<!--
|PDB= 3bto |SIZE=350|CAPTION= <scene name='initialview01'>3bto</scene>, resolution 1.66&Aring;
The line below this paragraph, containing "STRUCTURE_3bto", creates the "Structure Box" on the page.
|SITE= <scene name='pdbsite=NAD:Dinucleotide+Binding+Site'>NAD</scene>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
|LIGAND= <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SSB:3-BUTYLTHIOLANE+1-OXIDE'>SSB</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Alcohol_dehydrogenase Alcohol dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.1 1.1.1.1] </span>
or leave the SCENE parameter empty for the default display.
|GENE=  
-->
|DOMAIN=
{{STRUCTURE_3bto| PDB=3bto  | SCENE= }}  
|RELATEDENTRY=
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bto OCA], [http://www.ebi.ac.uk/pdbsum/3bto PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3bto RCSB]</span>
}}


'''HORSE LIVER ALCOHOL DEHYDROGENASE COMPLEXED TO NADH AND (1S,3S)3-BUTYLTHIOLANE 1-OXIDE'''
'''HORSE LIVER ALCOHOL DEHYDROGENASE COMPLEXED TO NADH AND (1S,3S)3-BUTYLTHIOLANE 1-OXIDE'''
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[[Category: Plapp, B V.]]
[[Category: Plapp, B V.]]
[[Category: Ramaswamy, S.]]
[[Category: Ramaswamy, S.]]
[[Category: alcohol]]
[[Category: Alcohol]]
[[Category: dehydrogenase]]
[[Category: Dehydrogenase]]
[[Category: nicotinamide coenzyme]]
[[Category: Nicotinamide coenzyme]]
[[Category: oxidoreductase]]
[[Category: Oxidoreductase]]
[[Category: sulfoxide]]
[[Category: Sulfoxide]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 21:05:32 2008''
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:28:53 2008''

Revision as of 21:05, 4 May 2008

File:3bto.gif

Template:STRUCTURE 3bto

HORSE LIVER ALCOHOL DEHYDROGENASE COMPLEXED TO NADH AND (1S,3S)3-BUTYLTHIOLANE 1-OXIDE


OverviewOverview

Thiolane 1-oxides are analogs of the carbonyl substrates that bind to the alcohol dehydrogenase-NADH complex and are potent uncompetitive inhibitors against alcohol [Chadha, V. K., et al. (1985) J. Med. Chem. 28, 36-40]. The four stereoisomers of 3-butylthiolane 1-oxide (BTO) were separated by chiral phase chromatography. CD and 1H-NMR spectra identified the enantiomeric pairs. 1H-NMR chemical shifts were assigned on the basis of COSY spectra of both diastereoisomers and confirmed by HMQC spectra. Coupling constants were determined through one-dimensional decoupling experiments. NMR with chiral shift reagents, Eu(hfc)3 [europium tris [3-[(heptafluoropropyl)hydroxymethylene]-(+)-camphorate]] or (R)-(-)-N-(3,5-dinitrobenzoyl)-alpha-methylbenzylamine, determined that the most inhibitory isomer is either 1S,3R or 1R,3S. The chemical shifts of protons in the thiolane 1-oxide ring were influenced by the whole structure and were not correlated with the computed Mulliken charges. X-ray crystallography at 2.1 and 1.66 A resolution of the ternary enzyme complexes with NADH demonstrated that the absolute configuration of the most inhibitory (Kii = 0.31 microM) stereoisomer is 1S,3R and the next best inhibitor (Kii = 0.73 microM) is 1S,3S. The thiolane 1-oxide rings bind in the same position, in the substrate binding site, but the geometry of the complexes suggests that the sulfoxides are not transition state analogs. Significantly, the butyl groups of the two isomers are accommodated differently by flexible amino acid side chains adopting alternative rotameric conformations.

About this StructureAbout this Structure

3BTO is a Single protein structure of sequence from Equus caballus. Full crystallographic information is available from OCA.

ReferenceReference

Flexibility of liver alcohol dehydrogenase in stereoselective binding of 3-butylthiolane 1-oxides., Cho H, Ramaswamy S, Plapp BV, Biochemistry. 1997 Jan 14;36(2):382-9. PMID:9003191 Page seeded by OCA on Sun May 4 21:05:32 2008

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