3d47: Difference between revisions

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 ==Crystal structure of L-rhamnonate dehydratase from Salmonella typhimurium complexed with Mg and D-malate==
-<StructureSection load='3d47' size='340' side='right' caption='[[3d47]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+<StructureSection load='3d47' size='340' side='right'caption='[[3d47]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3d47]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Salty Salty]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D47 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3D47 FirstGlance]. <br>
+<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D47 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D47 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MLT:D-MALATE'>MLT</scene></td></tr>
+</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d47 OCA], [https://pdbe.org/3d47 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d47 RCSB], [https://www.ebi.ac.uk/pdbsum/3d47 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d47 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3d47 TOPSAN]</span></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3box|3box]], [[3d46|3d46]]</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">yfaW, STM2291 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=99287 SALTY])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d47 OCA], [http://pdbe.org/3d47 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3d47 RCSB], [http://www.ebi.ac.uk/pdbsum/3d47 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3d47 ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3d47 TOPSAN]</span></td></tr>
 </table>
-== Function ==
-[[http://www.uniprot.org/uniprot/RHMD_SALTY RHMD_SALTY]] Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy-L-rhamnonate (KDR). Can also dehydrate L-lyxonate and L-mannonate, although less efficiently, but not 2-keto-4-hydroxyheptane-1,7-dioate.<ref>PMID:18754693</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 21: / Line 16: @@
 </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d47 ConSurf].
 <div style="clear:both"></div>
-== References ==
-<references/>
 __TOC__
 </StructureSection>
-[[Category: Salty]]
+[[Category: Large Structures]]
-[[Category: Almo, S C]]
+[[Category: Almo SC]]
-[[Category: Burley, S K]]
+[[Category: Burley SK]]
-[[Category: Fedorov, A A]]
+[[Category: Fedorov AA]]
-[[Category: Fedorov, E V]]
+[[Category: Fedorov EV]]
-[[Category: Gerlt, J A]]
+[[Category: Gerlt JA]]
-[[Category: Structural genomic]]
+[[Category: Sauder JM]]
-[[Category: Sauder, J M]]
-[[Category: L-rhamnonate dehydratase]]
-[[Category: Lyase]]
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-[[Category: PSI, Protein structure initiative]]
-[[Category: Target 9265a]]