2q9e: Difference between revisions

Revision as of 14:34, 4 May 2008

Structure of spin-labeled T4 lysozyme mutant S44R1

OverviewOverview

Site-directed spin labeling provides a means for exploring structure and dynamics in proteins. To interpret the complex EPR spectra that often arise, it is necessary to characterize the rotamers of the spin-labeled side chain and the interactions they make with the local environment in proteins of known structure. For this purpose, crystal structures have been determined for T4 lysozyme bearing a nitroxide side chain (R1) at the solvent-exposed helical sites 41 and 44 in the B helix. These sites are of particular interest in that the corresponding EPR spectra reveal two dynamic states of R1, one of which is relatively immobilized suggesting interactions of the nitroxide with the environment. The crystal structures together with the effect of mutagenesis of nearest neighbors on the motion of R1 suggest intrahelical interactions of 41R1 with the i + 4 residue and of 44R1 with the i + 1 residue. Such interactions appear to be specific to particular rotamers of the R1 side chain.

About this StructureAbout this Structure

2Q9E is a Single protein structure of sequence from Enterobacteria phage t4. Full crystallographic information is available from OCA.

ReferenceReference

Structural determinants of nitroxide motion in spin-labeled proteins: Solvent-exposed sites in helix B of T4 lysozyme., Guo Z, Cascio D, Hideg K, Hubbell WL, Protein Sci. 2008 Feb;17(2):228-39. Epub 2007 Dec 20. PMID:18096642 Page seeded by OCA on Sun May 4 14:34:24 2008

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
 [[Image:2q9e.jpg|left|200px]]
- {{Structure
+<!--
-|PDB= 2q9e |SIZE=350|CAPTION= <scene name='initialview01'>2q9e</scene>, resolution 2.100&Aring;
+The line below this paragraph, containing "STRUCTURE_2q9e", creates the "Structure Box" on the page.
-|SITE= <scene name='pdbsite=AC1:Hed+Binding+Site+For+Residue+A+900'>AC1</scene>, <scene name='pdbsite=AC2:Hed+Binding+Site+For+Residue+B+910'>AC2</scene> and <scene name='pdbsite=AC3:Hed+Binding+Site+For+Residue+B+920'>AC3</scene>
+You may change the PDB parameter (which sets the PDB file loaded into the applet)
-|LIGAND= <scene name='pdbligand=HED:2-HYDROXYETHYL+DISULFIDE'>HED</scene>, <scene name='pdbligand=R1A:3-{[(2,2,5,5-TETRAMETHYL-1-OXO-2,5-DIHYDRO-1H-PYRROLIUM-3-YL)METHYL]DISULFANYL}-D-ALANINE'>R1A</scene>
+or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span>
+or leave the SCENE parameter empty for the default display.
-|GENE= E ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 Enterobacteria phage T4])
+-->
-|DOMAIN=
+{{STRUCTURE_2q9e|  PDB=2q9e  |  SCENE=  }}
-|RELATEDENTRY=[[2q9d|2Q9D]]
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2q9e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q9e OCA], [http://www.ebi.ac.uk/pdbsum/2q9e PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2q9e RCSB]</span>
-}}
 '''Structure of spin-labeled T4 lysozyme mutant S44R1'''
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 [[Category: Hideg, K.]]
 [[Category: Hubbell, W L.]]
-[[Category: electron paramagnetic resonance]]
+[[Category: Electron paramagnetic resonance]]
-[[Category: epr]]
+[[Category: Epr]]
-[[Category: hydrolase]]
+[[Category: Hydrolase]]
-[[Category: nitroxide]]
+[[Category: Nitroxide]]
-[[Category: spin label]]
+[[Category: Spin label]]
-[[Category: t4 lysozyme]]
+[[Category: T4 lysozyme]]
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 14:34:24 2008''
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:46:36 2008''