6a4z: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
Line 1: Line 1:


==Oxidase ChaP==
==Oxidase ChaP==
<StructureSection load='6a4z' size='340' side='right' caption='[[6a4z]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='6a4z' size='340' side='right'caption='[[6a4z]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6a4z]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_chartreusis"_(leach_et_al._1953)_preobrazhenskaya_1966 "actinomyces chartreusis" (leach et al. 1953) preobrazhenskaya 1966]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A4Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6A4Z FirstGlance]. <br>
<table><tr><td colspan='2'>[[6a4z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_chartreusis Streptomyces chartreusis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A4Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6A4Z FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">chaP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1969 "Actinomyces chartreusis" (Leach et al. 1953) Preobrazhenskaya 1966])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6a4z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6a4z OCA], [https://pdbe.org/6a4z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6a4z RCSB], [https://www.ebi.ac.uk/pdbsum/6a4z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6a4z ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6a4z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6a4z OCA], [http://pdbe.org/6a4z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6a4z RCSB], [http://www.ebi.ac.uk/pdbsum/6a4z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6a4z ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q4R0L3_STRCX Q4R0L3_STRCX]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Ge, H M]]
[[Category: Large Structures]]
[[Category: Zhang, B]]
[[Category: Streptomyces chartreusis]]
[[Category: Biosynthetic protein]]
[[Category: Ge HM]]
[[Category: Chartreusin]]
[[Category: Zhang B]]
[[Category: Dimer]]
[[Category: Dioxygenase]]
[[Category: Oxidative rearrangement]]
[[Category: Voc family]]

Latest revision as of 12:41, 23 October 2024

Oxidase ChaPOxidase ChaP

Structural highlights

6a4z is a 2 chain structure with sequence from Streptomyces chartreusis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.7Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q4R0L3_STRCX

Publication Abstract from PubMed

Oxidative rearrangements play key roles in introducing structural complexity and biological activities of natural products biosynthesized by type II polyketide synthases (PKSs). Chartreusin (1) is a potent antitumor polyketide that contains a unique rearranged pentacyclic aromatic bilactone aglycone derived from a type II PKS. Herein, we report an unprecedented dioxygenase, ChaP, that catalyzes the final alpha-pyrone ring formation in 1 biosynthesis using flavin-activated oxygen as an oxidant. The X-ray crystal structures of ChaP and two homologues, docking studies, and site-directed mutagenesis provided insights into the molecular basis of the oxidative rearrangement that involves two successive C-C bond cleavage steps followed by lactonization. ChaP is the first example of a dioxygenase that requires a flavin-activated oxygen as a substrate despite lacking flavin binding sites, and represents a new class in the vicinal oxygen chelate enzyme superfamily.

Molecular Basis for the Final Oxidative Rearrangement Steps in Chartreusin Biosynthesis.,Wang YS, Zhang B, Zhu J, Yang CL, Guo Y, Liu CL, Liu F, Huang H, Zhao S, Liang Y, Jiao RH, Tan RX, Ge HM J Am Chem Soc. 2018 Aug 15. doi: 10.1021/jacs.8b06623. PMID:30067334[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Wang YS, Zhang B, Zhu J, Yang CL, Guo Y, Liu CL, Liu F, Huang H, Zhao S, Liang Y, Jiao RH, Tan RX, Ge HM. Molecular Basis for the Final Oxidative Rearrangement Steps in Chartreusin Biosynthesis. J Am Chem Soc. 2018 Aug 15. doi: 10.1021/jacs.8b06623. PMID:30067334 doi:http://dx.doi.org/10.1021/jacs.8b06623

6a4z, resolution 1.70Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA