Talk:Garman lab: Interconversion of lysosomal enzyme specificities: Difference between revisions

← Older edit Newer edit →

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Karsten Theis

@@ Line 111: / Line 111: @@
 Figure 2 panel D
   <nowiki>
-load 3lx9_3h54.pdb‎
+load files "=3H54" "=3LX9"
 restrict none  # display is cleared
+define ~act2 2.1 and (47,92,93,134,142,168,170,172,203,206,207,227,231) and *:A
+define ~act1 1.1 and (33,78,79,119,127,154,156,158,188,191,192,213,217) and *:A
+compare {2.1} {1.1} SUBSET{*.CA} ATOMS{~act2}{~act1} ROTATE TRANSLATE
 set ssbonds SIDECHAIN
-select (188,191,158,127,119,78,79,33,217,213,192,154,156) and (sidechain or *.CA) and *:A/2; wireframe 60; color bonds cornflowerblue
+select 1.1 and ~act1 and (sidechain or *.CA); wireframe 60; color bonds cornflowerblue
 select selected and not _C; spacefill 80; color cpk
-select (188,191) and *:A.CB/2; label %m%r; color label black; font label 20
+select 1.1 and (32-34, 77-80, 118-120, 126-128, 153-159, 187-193, 212-218) and *:A.CA;
-select a2g:A/2; wireframe 60; center selected
+trace 10; color cornflowerblue
-select selected and _C; color skyblue
+select 1000:A; wireframe 60; center selected
-select (32-34, 77-80, 118-120, 126-128, 153-159, 187-193, 212-218) and *:A.CA/2; trace 10; color cornflowerblue
+select 1.1 and ~act1 and *:A.CB; label %m%r; color label black; font label 14
-select (47,92,93,134,142,168,170,172,203,206,207,227,231) and (sidechain or *.CA) and *:A/1; wireframe 60; color bonds yellow
+select 2.1 and ~act2 and (sidechain or *.CA); wireframe 60; color bonds yellow
 select selected and not _C; spacefill 80; color cpk
-select a2g:A/1; wireframe 60; center selected
+select 2.1 and (46-48, 91-94, 133-135, 141-143, 169-173, 202-208, 226-232) and *:A.CA;
-select selected and _C; color gold
+trace 10; color yellow
+select 1000:A; wireframe 60; center selected
+#select 2.1 and ~act2 and *:A.CB; label %m%r; color label black; font label 14
 </nowiki>