2bj6: Difference between revisions

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==Crystal Structure of a decameric HNA-RNA hybrid==
==Crystal Structure of a decameric HNA-RNA hybrid==
<StructureSection load='2bj6' size='340' side='right' caption='[[2bj6]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
<StructureSection load='2bj6' size='340' side='right'caption='[[2bj6]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2bj6]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BJ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BJ6 FirstGlance]. <br>
<table><tr><td colspan='2'>[[2bj6]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BJ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BJ6 FirstGlance]. <br>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Herdewijn, P]]
[[Category: Herdewijn, P]]
[[Category: Maier, T]]
[[Category: Maier, T]]

Revision as of 10:58, 19 February 2020

Crystal Structure of a decameric HNA-RNA hybridCrystal Structure of a decameric HNA-RNA hybrid

Structural highlights

2bj6 is a 8 chain structure. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
NonStd Res:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

The crystal structure of a decameric HNA/RNA (HNA = 2',3'-dideoxy-1',5'-anhydro-d-arabinohexitol nucleic acid) hybrid with the RNA sequence 5'-GGCAUUACGG-3' is the first crystal structure of a hybrid duplex between a naturally occurring nucleic acid and a strand, which is fully modified to contain a six-membered ring instead of ribose. The presence of four duplex helices in the asymmetric unit allows for a detailed discussion of hydration, which revealed a tighter spinelike backbone hydration for the HNA- than for the RNA-strands. The reinforced backbone hydration is suggested to contribute significantly to the exceptional stability of HNA-containing duplexes and might be one of the causes for the evolutionary preference for ribose-derived nucleic acids.

Reinforced HNA backbone hydration in the crystal structure of a decameric HNA/RNA hybrid.,Maier T, Przylas I, Strater N, Herdewijn P, Saenger W J Am Chem Soc. 2005 Mar 9;127(9):2937-43. PMID:15740130[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Maier T, Przylas I, Strater N, Herdewijn P, Saenger W. Reinforced HNA backbone hydration in the crystal structure of a decameric HNA/RNA hybrid. J Am Chem Soc. 2005 Mar 9;127(9):2937-43. PMID:15740130 doi:10.1021/ja045843v

2bj6, resolution 2.60Å

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