2ghm: Difference between revisions

Revision as of 05:07, 4 May 2008

Mutated MAP kinase P38 (Mus Musculus) in complex with Inhbitor PG-895449

OverviewOverview

A new class of tumor necrosis factor alpha (TNF-alpha) synthesis inhibitors based on an N-2,4-pyrimidine-N-phenyl-N'-phenyl urea scaffold is described. Many of these compounds showed low-nanomolar activity against lipopolysaccharide stimulated TNF-alpha production. X-ray co-crystallization studies with mutated p38alpha showed that these trisubstituted ureas interact with the ATP-binding pocket in a pseudo-bicyclic conformation brought about by the presence of an intramolecular hydrogen bonding interaction.

About this StructureAbout this Structure

2GHM is a Single protein structure of sequence from Mus musculus. Full crystallographic information is available from OCA.

ReferenceReference

Development of N-2,4-pyrimidine-N-phenyl-N'-phenyl ureas as inhibitors of tumor necrosis factor alpha (TNF-alpha) synthesis. Part 1., Brugel TA, Maier JA, Clark MP, Sabat M, Golebiowski A, Bookland RG, Laufersweiler MJ, Laughlin SK, Vanrens JC, De B, Hsieh LC, Mekel MJ, Janusz MJ, Bioorg Med Chem Lett. 2006 Jul 1;16(13):3510-3. Epub 2006 May 2. PMID:16632356 Page seeded by OCA on Sun May 4 05:07:03 2008

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
 [[Image:2ghm.gif|left|200px]]
- {{Structure
+<!--
-|PDB= 2ghm |SIZE=350|CAPTION= <scene name='initialview01'>2ghm</scene>, resolution 2.35&Aring;
+The line below this paragraph, containing "STRUCTURE_2ghm", creates the "Structure Box" on the page.
-|SITE=
+You may change the PDB parameter (which sets the PDB file loaded into the applet)
-|LIGAND= <scene name='pdbligand=LIC:3-(2-CHLOROBENZYL)-1-(2-{[(1S)-2-HYDROXY-1,2-DIMETHYLPROPYL]AMINO}PYRIMIDIN-4-YL)-1-(4-METHOXYPHENYL)UREA'>LIC</scene>
+or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Non-specific_serine/threonine_protein_kinase Non-specific serine/threonine protein kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1] </span>
+or leave the SCENE parameter empty for the default display.
-|GENE= Mapk14, Crk1, Csbp1, Csbp2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus])
+-->
-|DOMAIN=
+{{STRUCTURE_2ghm|  PDB=2ghm  |  SCENE=  }}
-|RELATEDENTRY=[[1yw2|1YW2]], [[1ywr|1YWR]], [[2ghl|2GHL]]
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ghm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ghm OCA], [http://www.ebi.ac.uk/pdbsum/2ghm PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2ghm RCSB]</span>
-}}
 '''Mutated MAP kinase P38 (Mus Musculus) in complex with Inhbitor PG-895449'''
@@ Line 31: / Line 28: @@
 [[Category: Pokross, M E.]]
 [[Category: Walter, R L.]]
-[[Category: map kinase p38]]
+[[Category: Map kinase p38]]
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 05:07:03 2008''
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:16:47 2008''