5otc: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
 ==Structure of the periplasmic binding protein (PBP) NocT from Agrobacterium tumefaciens C58 in complex with noroctopinic acid.==
-<StructureSection load='5otc' size='340' side='right' caption='[[5otc]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+<StructureSection load='5otc' size='340' side='right'caption='[[5otc]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5otc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrfc Agrfc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OTC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OTC FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5otc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OTC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5OTC FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AQK:(2~{S})-5-azanyl-2-(2-hydroxy-2-oxoethylamino)pentanoic+acid'>AQK</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nocT, Atu6027, AGR_pTi_67 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRFC])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AQK:(2~{S})-5-azanyl-2-(2-hydroxy-2-oxoethylamino)pentanoic+acid'>AQK</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5otc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5otc OCA], [http://pdbe.org/5otc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5otc RCSB], [http://www.ebi.ac.uk/pdbsum/5otc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5otc ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5otc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5otc OCA], [https://pdbe.org/5otc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5otc RCSB], [https://www.ebi.ac.uk/pdbsum/5otc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5otc ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/NOCT_AGRFC NOCT_AGRFC]] Component of the nopaline active transport system probably consisting of four subunits: Q, M, P and T. This system is also capable of transporting octopine provided that catabolic functions are induced with nopaline.
+[https://www.uniprot.org/uniprot/NOCT_AGRFC NOCT_AGRFC] Component of the nopaline active transport system probably consisting of four subunits: Q, M, P and T. This system is also capable of transporting octopine provided that catabolic functions are induced with nopaline.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 23: / Line 23: @@
 __TOC__
 </StructureSection>
-[[Category: Agrfc]]
+[[Category: Agrobacterium fabrum str. C58]]
-[[Category: Morera, S]]
+[[Category: Large Structures]]
-[[Category: Vigouroux, A]]
+[[Category: Morera S]]
-[[Category: Agrobacterium tumefacien]]
+[[Category: Vigouroux A]]
-[[Category: Arginine]]
-[[Category: Bacterial]]
-[[Category: Bacterial protein]]
-[[Category: Dna]]
-[[Category: Gene expression regulation]]
-[[Category: Gene]]
-[[Category: Ligand]]
-[[Category: Plant tumor]]
-[[Category: Plasmid]]
-[[Category: Protein binding]]