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Endonuclease: Difference between revisions

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**[[1bix]] - hENN – human<br />
**[[1bix]] - hENN – human<br />
**[[5um9]], [[5kse]], [[5k97]] – hENN (mutant) + DNA <br />
**[[1cfr]] – ENN – ''Citrobacter freundii''<br />
**[[1cfr]] – ENN – ''Citrobacter freundii''<br />
**[[1af5]] - CrENN – ''Chlamydomonas reinhardtii''<br />
**[[1af5]] - CrENN – ''Chlamydomonas reinhardtii''<br />
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**[[4q2c]] - TteCas3 – ''Thermobaclum terrenum''<br />
**[[4q2c]] - TteCas3 – ''Thermobaclum terrenum''<br />
**[[4q2d]] - TteCas3 + ATP<br />
**[[4q2d]] - TteCas3 + ATP<br />
**[[3i4h]] – Cas4 - ''Pyrobaculum calidifontis''<br />
**[[3i4h]] – Cas4 - ''Pyrobaculum calidifontis''<br /
**[[4qr0]], [[4qr1]] -  SpCas9 (Csn1) – ''Streptococcus pyogenes''<br />
**[[4qr0]], [[4qr1]] -  SpCas9 (Csn1) – ''Streptococcus pyogenes''<br />
**[[4ilr]], [[3zfv]] – SsCas6 <br />
**[[4ilr]], [[3zfv]] – SsCas6 <br />
**[[3i4h]] – PfCas6 - ''Pyrococcus furiosus''<br />
**[[3i4h]] – PfCas6 - ''Pyrococcus furiosus''<br />
**[[4dzd]] – EcCas6e<br />
**[[4dzd]] – EcCas6e<br />
**[[4qr0]], [[4qr1]] -  SpCas9 (Csn1) – ''Streptococcus pyogenes''<br />
**[[4qr0]], [[4qr1]], [[4cmp]], [[4cmq]] -  SpCas9 <br />
**[[4qr0]], [[4qr1]], [[4cmp]], [[4cmq]] -  SpCas9 <br />
**[[4ogc]], [[4oge]] – Cas9 II-C – ''Actinomyces naeslundii''<br />
**[[4ogc]], [[4oge]] – Cas9 II-C – ''Actinomyces naeslundii''<br />
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*Cas ENN complex with RNA and DNA
*Cas ENN complex with RNA and DNA


**[[5dlj]], [[5dqt]], [[5dqu]], [[5dqz]], [[5ds4]], [[5ds5]], [[5ds6]] – EcCas1 + EcCas2 + DNA<br />
**[[5dlj]], [[5dqt]], [[5dqu]], [[5dqz]], [[5ds4]], [[5ds5]], [[5ds6]], [[5vvl]], [[5vvk]], [[5vvj]] – EcCas1 + EcCas2 + DNA<br />
**[[5wfe]] – EcCas1 + EcCas2 + IHF-a + IHF-b + DNA<br />
**[[5xvp]], [[5xvo]], [[5xvn]] – Cas1 + Cas2 + DNA – ''Enterococcus faecalis''<br />
**[[4ill]], [[4ilm]] – SsCas6 + RNA - ''Sulfolobus solfataricus''<br />
**[[4ill]], [[4ilm]] – SsCas6 + RNA - ''Sulfolobus solfataricus''<br />
**[[5uz9]] – PaCsa5f + Cas7f + Cas8f + anti-crispr protein + RNA<br />
**[[5uz9]] – PaCsa5f + Cas7f + Cas8f + anti-crispr protein + RNA<br />
**[[6b48]], [[6b47]], [[6b46]], [[6b45]] – PaCsa6 + Csy1 + Csy2 + Csy3 + anti-crispr protein + RNA<br />
**[[6b44]] – PaCsa6 + Csy1 + Csy2 + Csy3 + anti-crispr protein + DNA<br />
**[[3pkm]] – PfCas6 + RNA<br />
**[[3pkm]] – PfCas6 + RNA<br />
**[[2y8w]], [[2y8y]], [[3qrp]], [[3qrq]], [[2qrr]] – TtCas6e (Cse3) + RNA<br />
**[[2y8w]], [[2y8y]], [[3qrp]], [[3qrq]], [[2qrr]] – TtCas6e (Cse3) + RNA<br />
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**[[4zt9]] - SpCas9 (mutant) + RNA <br />
**[[4zt9]] - SpCas9 (mutant) + RNA <br />
**[[5f9r]] - SpCas9 + RNA + DNA<br />
**[[5f9r]] - SpCas9 + RNA + DNA<br />
**[[4oo8]], [[4un3]], [[4un4]], [[4un5]], [[5fw1]], [[5fw2]], [[5fw3]], [[5fq5]], [[5b2r]], [[5b2s]], [[5b2t]] - SpCas9 (Csn1) (mutant) + RNA + DNA<br />
**[[4oo8]], [[4un3]], [[4un4]], [[4un5]], [[5fw1]], [[5fw2]], [[5fw3]], [[5fq5]], [[5b2r]], [[5b2s]], [[5b2t]], [[5y36]] - SpCas9 (Csn1) (mutant) + RNA + DNA<br />
**[[5x2h]], [[5x2g]] – Cas9 + RNA + DNA – ''Campylobacter jejuni''<br />
**[[5x2h]], [[5x2g]] – Cas9 + RNA + DNA – ''Campylobacter jejuni''<br />
**[[5czz]] - SaCas9 (Csn1) + RNA + DNA - ''Staphylococcus aureus''<br />
**[[5czz]] - SaCas9 (Csn1) + RNA + DNA - ''Staphylococcus aureus''<br />
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**[[5b2o]], [[5b2p]], [[5b2q]] - FtCas9 (mutant) + RNA + DNA – ''Francisella tularensis''<br />
**[[5b2o]], [[5b2p]], [[5b2q]] - FtCas9 (mutant) + RNA + DNA – ''Francisella tularensis''<br />
**[[4u7u]] – EcCasA (Cse1) + CasB + CasC + CasD + CasE + RNA<br />
**[[4u7u]] – EcCasA (Cse1) + CasB + CasC + CasD + CasE + RNA<br />
**[[4qyz]] – EcCasA (Cse1) + CasB + CasC + CasD + CasE + RNA + DNA<br />
**[[4qyz]], [[5h9f]], [[5h9e]] – EcCasA (Cse1) + CasB + CasC + CasD + CasE + RNA + DNA<br />
**[[5wqe]] – AaCas C2C1 + RNA – ''Alicyclobacillus acidoterrestris''<br />
**[[5wqe]] – AaCas C2C1 + RNA – ''Alicyclobacillus acidoterrestris''<br />
**[[5u34]] – AaCas C2C1 (mutant) + RNA <br />
**[[5u34]] – AaCas C2C1 (mutant) + RNA <br />
**[[5u30]], [[5u31]], [[5u33]] – AaCas C2C1 + RNA + DNA<br />
**[[5u30]], [[5u31]], [[5u33]] – AaCas C2C1 + RNA + DNA<br />
**[[5kk5]], [[5b43]] – Cas Cpf1 + RNA + DNA – ''Acidaminococcus''<br />
**[[5kk5]], [[5b43]] – AcCas Cpf1 + RNA + DNA – ''Acidaminococcus''<br />
**[[5xh7]], [[5xh6]] – AcCas Cpf1 (mutant) + RNA + DNA <br />
**[[5ng6]] – FtCas Cpf1 + RNA  <br />
**[[5nfv]], [[5mga]] – FtCas Cpf1 + RNA + DNA <br />


*EcoKI ENN
*EcoKI ENN
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**[[1fok]] – PoENN + DNA – ''Planomicrobium okeanokoites''<br />
**[[1fok]] – PoENN + DNA – ''Planomicrobium okeanokoites''<br />
**[[2fok]] – PoENN
**[[2fok]] – PoENN
*LAGLIDAD ENN
**[[4z1x]] – fyENN + DNA – fission yeast<br />
**[[5e5o]] – ENN + DNA – ''Sordaria macropora''<br />


*PvuII ENN
*PvuII ENN
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**[[1odg]] - EcENN + DNA<br />
**[[1odg]] - EcENN + DNA<br />
**[[1h7u]] – hENN<br />
**[[1h7u]] – hENN<br />
**[[5u5r]] – hENN + importin<br />


*Vvn ENN
*Vvn ENN
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**[[1ouo]] – VvENN – ''Vibrio vulnificus''<br />
**[[1ouo]] – VvENN – ''Vibrio vulnificus''<br />
**[[1oup]], [[2ivk]] - VvENN + DNA  
**[[1oup]], [[2ivk]] - VvENN + DNA  
*Structure-specific ENN
**[[4xm5]] – CgENN SLX1 subunit – ''Candida glabrata''<br />
**[[4xlg]] – CgENN SLX1 (mutant)+SLX4 subunits<br />
**[[4zdt]] – fyENN SLX1+SLX4 subunits<br />
**[[4zou]] – hENN SLX4 subunit BTB domain<br />
**[[4uyi]] – hENN SLX4 subunit BTB domain (mutant)<br />


*BfiI ENN
*BfiI ENN
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**[[4h6d]] – ENN – ''Geobacter metallireducens''<br />
**[[4h6d]] – ENN – ''Geobacter metallireducens''<br />
**[[5h0o]], [[5h0m]] – ENN – Geobacillus virus E2<br />
**[[5h0o]], [[5h0m]] – ENN – Geobacillus virus E2<br />
**[[5cxr]] – ENN + pyrazole derivative – Influenza virus <br />


*UV damage ENN
*UV damage ENN
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**[[5uct]], [[5cca]] - MtENN – ''Mycobacterium tuberculosis''<br />
**[[5uct]], [[5cca]] - MtENN – ''Mycobacterium tuberculosis''<br />
*Vapc ENN
**[[5wzf]], [[5wz4]] – MtENN-20 <br />
**[[5ed0]], [[5ecy]] – SfENN – ''Shigella flexneri''<br />
**[[5ecy]], [[5ecw]], [[5ecd]] – SfENN (mutant)<br />


*Muts2 ENN
*Muts2 ENN
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**[[5gkc]], [[4qn0]] – CeENN (mutant)  – ''Caenorhabdfitis elegans''<br />
**[[5gkc]], [[4qn0]] – CeENN (mutant)  – ''Caenorhabdfitis elegans''<br />
**[[5gkp]] – CeENN (mutant) + DNA  <br />
**[[5gkp]] – CeENN (mutant) + DNA  <br />
*ENN S
**[[5ybb]] – ENN + R-M system + DNA – ''Caldanaerobacter subterraneus''  <br />


*ENN V
*ENN V
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**[[5aoy]] – mENN (mutant)  <br />
**[[5aoy]] – mENN (mutant)  <br />
**[[4xpu]] – EcENN  <br />
**[[4xpu]] – EcENN  <br />
*Apurinic-apyrimidinic ENN
**[[5cfg]] – hENN <br />
**[[5dff]], [[5dfh]], [[5dfi]], [[5dfj]], [[5dg0]], [[5wn5]], [[5wn4]], [[5wn3]], [[5wn2]], [[5wn1]], [[5wn0]]  – hENN + DNA<br />


*'''Intron-encoded endonuclease'''
*'''Intron-encoded endonuclease'''
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*I-DmoI ENN
*I-DmoI ENN


**[[1b24]], [[2vs7]], [[2vs8]], [[4un7]], [[4un8]], [[4un9]], [[4una]], [[4unb]], [[4unc]], [[4ut0]], [[4d6n]], [[4d6o]], [[5ak9]], [[5a0w]] - DmENN + DNA – ''Desulfurococcus mobilis''<br />
**[[1b24]], [[2vs7]], [[2vs8]], [[4un7]], [[4un8]], [[4un9]], [[4una]], [[4unb]], [[4unc]], [[4ut0]], [[4d6n]], [[4d6o]], [[5ak9]], [[5a0w]], [[5o6g]], [[5o6i]] - DmENN + DNA – ''Desulfurococcus mobilis''<br />
**[[5akf]], [[5akm]], [[5akn]] - DmENN (mutant) + DNA <br />
**[[5akf]], [[5akm]], [[5akn]] - DmENN (mutant) + DNA <br />
**[[1mow]] – DmENN/CrENN + DNA
**[[1mow]] – DmENN/CrENN + DNA

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman
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