Unusual sequence numbering: Difference between revisions
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The numbering of protein and nucleic acid sequences is arbitrary in structure files from the [[PDB|World Wide Protein Data Bank]] (PDB). Here are some examples. These PDB entries are not shown here. To explore these, the links below will display them in [[FirstGlance in Jmol]] | The numbering of protein and nucleic acid sequences is arbitrary in structure files from the [[PDB|World Wide Protein Data Bank]] (PDB). Here are some examples. These PDB entries are not shown here. To explore these, the links below will display them in [[FirstGlance in Jmol]] (link with arrow) or in Proteopedia. | ||
==Not Monotonic== | ==Not Monotonic== | ||
Rarely, sequence numbers do not increase monotonically from N to C terminus. An example is [http://firstglance.jmol.org/fgij/fg.htm?4zwj 4zwj] / [[4zwj]] | Rarely, sequence numbers do not increase monotonically from N to C terminus. An example<ref>Thanks to Rachel Kramer Green of RCSB.org for this example.</ref> is [http://firstglance.jmol.org/fgij/fg.htm?4zwj 4zwj] / [[4zwj]]. | ||
== References == | == References == | ||
<references/> | <references/> | ||
Revision as of 21:06, 4 December 2017
The numbering of protein and nucleic acid sequences is arbitrary in structure files from the World Wide Protein Data Bank (PDB). Here are some examples. These PDB entries are not shown here. To explore these, the links below will display them in FirstGlance in Jmol (link with arrow) or in Proteopedia.
Not MonotonicNot Monotonic
Rarely, sequence numbers do not increase monotonically from N to C terminus. An example[1] is 4zwj / 4zwj.
ReferencesReferences
- ↑ Thanks to Rachel Kramer Green of RCSB.org for this example.