2aei: Difference between revisions

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[[Image:2aei.gif|left|200px]]
[[Image:2aei.gif|left|200px]]


{{Structure
<!--
|PDB= 2aei |SIZE=350|CAPTION= <scene name='initialview01'>2aei</scene>, resolution 2.52&Aring;
The line below this paragraph, containing "STRUCTURE_2aei", creates the "Structure Box" on the page.
|SITE=
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
|LIGAND= <scene name='pdbligand=03R:2-({6-{3-[AMINO(IMINO)METHYL]PHENOXY}-3,5-DIFLUORO-4-[(1-METHYL-3-PHENYLPROPYL)AMINO]-2-PYRIDINYL}OXY)BENZOIC+ACID'>03R</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene>, <scene name='pdbligand=CGU:GAMMA-CARBOXY-GLUTAMIC+ACID'>CGU</scene>
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Coagulation_factor_VIIa Coagulation factor VIIa], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.21 3.4.21.21] </span>
or leave the SCENE parameter empty for the default display.
|GENE= F7 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens]), F3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
-->
|DOMAIN=
{{STRUCTURE_2aei|  PDB=2aei |  SCENE= }}  
|RELATEDENTRY=[[1dan|1DAN]], [[1z6j|1Z6J]], [[1w0y|1W0Y]], [[1w2k|1W2K]], [[1ygc|1YGC]]
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2aei FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2aei OCA], [http://www.ebi.ac.uk/pdbsum/2aei PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2aei RCSB]</span>
}}


'''Crystal structure of a ternary complex of factor VIIa/tissue factor and 2-[[6-[3-(aminoiminomethyl)phenoxy]-3,5-difluro-4-[(1-methyl-3-phenylpropyl)amino]-2-pyridinyl]oxy]-benzoic acid'''
'''Crystal structure of a ternary complex of factor VIIa/tissue factor and 2-[[6-[3-(aminoiminomethyl)phenoxy]-3,5-difluro-4-[(1-methyl-3-phenylpropyl)amino]-2-pyridinyl]oxy]-benzoic acid'''
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[[Category: Adler, M.]]
[[Category: Adler, M.]]
[[Category: Whitlow, M.]]
[[Category: Whitlow, M.]]
[[Category: benzamidine]]
[[Category: Benzamidine]]
[[Category: blood coagulation]]
[[Category: Blood coagulation]]
[[Category: cofactor]]
[[Category: Cofactor]]
[[Category: enzyme inhibitor complex]]
[[Category: Enzyme inhibitor complex]]
[[Category: gla]]
[[Category: Gla]]
[[Category: pyridine]]
[[Category: Pyridine]]
[[Category: serine protease]]
[[Category: Serine protease]]
[[Category: thrombosis]]
[[Category: Thrombosis]]
[[Category: tissue factor]]
[[Category: Tissue factor]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 18:56:53 2008''
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:51:35 2008''

Revision as of 18:56, 3 May 2008

File:2aei.gif

Template:STRUCTURE 2aei

Crystal structure of a ternary complex of factor VIIa/tissue factor and 2-[[6-[3-(aminoiminomethyl)phenoxy]-3,5-difluro-4-[(1-methyl-3-phenylpropyl)amino]-2-pyridinyl]oxy]-benzoic acid


OverviewOverview

The activated Factor VII/tissue factor complex (FVIIa/TF) plays a key role in the formation of blood clots. Inhibition of this complex may lead to new antithrombotic drugs. An X-ray crystal structure of a fluoropyridine-based FVIIa/TF inhibitor bound in the active site of the enzyme complex suggested that incorporation of substitution at the 5-position of the hydroxybenzoic acid side chain could lead to the formation of more potent inhibitors through interactions with the S1'/S2' pocket.

DiseaseDisease

Known disease associated with this structure: Factor VII deficiency OMIM:[227500], Myocardial infarction, decreased susceptibility to OMIM:[227500]

About this StructureAbout this Structure

2AEI is a Protein complex structure of sequences from Homo sapiens. Full crystallographic information is available from OCA.

ReferenceReference

The discovery of fluoropyridine-based inhibitors of the Factor VIIa/TF complex., Kohrt JT, Filipski KJ, Cody WL, Cai C, Dudley DA, Van Huis CA, Willardsen JA, Rapundalo ST, Saiya-Cork K, Leadley RJ, Narasimhan L, Zhang E, Whitlow M, Adler M, McLean K, Chou YL, McKnight C, Arnaiz DO, Shaw KJ, Light DR, Edmunds JJ, Bioorg Med Chem Lett. 2005 Nov 1;15(21):4752-6. PMID:16125385 Page seeded by OCA on Sat May 3 18:56:53 2008

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