2a3t: Difference between revisions

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[[Image:2a3t.gif|left|200px]]
[[Image:2a3t.gif|left|200px]]


{{Structure
<!--
|PDB= 2a3t |SIZE=350|CAPTION= <scene name='initialview01'>2a3t</scene>, resolution 1.85&Aring;
The line below this paragraph, containing "STRUCTURE_2a3t", creates the "Structure Box" on the page.
|SITE=
You may change the PDB parameter (which sets the PDB file loaded into the applet)
|LIGAND= <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrite_reductase_(NO-forming) Nitrite reductase (NO-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.1 1.7.2.1] </span>
or leave the SCENE parameter empty for the default display.
|GENE= nirK ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1063 Rhodobacter sphaeroides])
-->
|DOMAIN=
{{STRUCTURE_2a3t| PDB=2a3t  | SCENE= }}  
|RELATEDENTRY=[[1zv2|1ZV2]]
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a3t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a3t OCA], [http://www.ebi.ac.uk/pdbsum/2a3t PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2a3t RCSB]</span>
}}


'''Cu-containing nitrite reductase'''
'''Cu-containing nitrite reductase'''
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==Reference==
==Reference==
Structures of the oxidized and reduced forms of nitrite reductase from Rhodobacter sphaeroides 2.4.3 at high pH: changes in the interactions of the type 2 copper., Jacobson F, Guo H, Olesen K, Okvist M, Neutze R, Sjolin L, Acta Crystallogr D Biol Crystallogr. 2005 Sep;61(Pt 9):1190-8. Epub 2005, Aug 16. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16131751 16131751]
Structures of the oxidized and reduced forms of nitrite reductase from Rhodobacter sphaeroides 2.4.3 at high pH: changes in the interactions of the type 2 copper., Jacobson F, Guo H, Olesen K, Okvist M, Neutze R, Sjolin L, Acta Crystallogr D Biol Crystallogr. 2005 Sep;61(Pt 9):1190-8. Epub 2005, Aug 16. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16131751 16131751]
[[Category: Nitrite reductase (NO-forming)]]
[[Category: Rhodobacter sphaeroides]]
[[Category: Rhodobacter sphaeroides]]
[[Category: Single protein]]
[[Category: Single protein]]
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[[Category: Olesen, K.]]
[[Category: Olesen, K.]]
[[Category: Sjolin, L.]]
[[Category: Sjolin, L.]]
[[Category: copper protein]]
[[Category: Copper protein]]
[[Category: denitrification]]
[[Category: Denitrification]]
[[Category: nitrite reduction]]
[[Category: Nitrite reduction]]
 
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Revision as of 18:33, 3 May 2008

File:2a3t.gif

Template:STRUCTURE 2a3t

Cu-containing nitrite reductase


OverviewOverview

Nitrite reductase is an enzyme operating in the denitrification pathway which catalyses the conversion of nitrite (NO2(-)) to gaseous nitric oxide (NO). Here, crystal structures of the oxidized and reduced forms of the copper-containing nitrite reductase from Rhodobacter sphaeroides 2.4.3 are presented at 1.74 and 1.85 A resolution, respectively. Whereas the structure of the enzyme is very similar to those of other copper-containing nitrite reductases, folding as a trimer and containing two copper sites per monomer, the structures reported here enable conformational differences between the oxidized and reduced forms of the enzyme to be identified. In the type 1 copper site, a rotational perturbation of the side chain of the copper ligand Met182 occurs upon reduction. At the type 2 copper site, a dual conformation of the catalytic residue His287 is observed in the oxidized structure but is lacking in the reduced structure, such that the interactions of the oxidized type 2 copper ion can be regarded as adopting octahedral geometry. These findings shed light on the structural mechanism of the reduction of a copper-bound nitrite to nitric oxide and water.

About this StructureAbout this Structure

2A3T is a Single protein structure of sequence from Rhodobacter sphaeroides. Full crystallographic information is available from OCA.

ReferenceReference

Structures of the oxidized and reduced forms of nitrite reductase from Rhodobacter sphaeroides 2.4.3 at high pH: changes in the interactions of the type 2 copper., Jacobson F, Guo H, Olesen K, Okvist M, Neutze R, Sjolin L, Acta Crystallogr D Biol Crystallogr. 2005 Sep;61(Pt 9):1190-8. Epub 2005, Aug 16. PMID:16131751 Page seeded by OCA on Sat May 3 18:33:59 2008

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