1of8: Difference between revisions
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[[Image:1of8.gif|left|200px]]<br /> | [[Image:1of8.gif|left|200px]]<br /><applet load="1of8" size="450" color="white" frame="true" align="right" spinBox="true" | ||
<applet load="1of8" size="450" color="white" frame="true" align="right" spinBox="true" | |||
caption="1of8, resolution 1.5Å" /> | caption="1of8, resolution 1.5Å" /> | ||
'''DOUBLE COMPLEX OF THE TYROSINE SENSITIVE DAHP SYNTHASE FROM S. CEREVISIAE WITH CO2+, PEP AND THE E4P ANALOGOUE G3P'''<br /> | '''DOUBLE COMPLEX OF THE TYROSINE SENSITIVE DAHP SYNTHASE FROM S. CEREVISIAE WITH CO2+, PEP AND THE E4P ANALOGOUE G3P'''<br /> | ||
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==About this Structure== | ==About this Structure== | ||
1OF8 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] with CO, PEP, G3P and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Transferred_entry:_2.5.1.54 Transferred entry: 2.5.1.54], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.15 4.1.2.15] | 1OF8 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] with CO, PEP, G3P and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Transferred_entry:_2.5.1.54 Transferred entry: 2.5.1.54], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.15 4.1.2.15] Known structural/functional Site: <scene name='pdbsite=AC1:G3p Binding Site For Chain B'>AC1</scene>. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1OF8 OCA]. | ||
==Reference== | ==Reference== | ||
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[[Category: synthetase]] | [[Category: synthetase]] | ||
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Revision as of 18:30, 18 December 2007
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DOUBLE COMPLEX OF THE TYROSINE SENSITIVE DAHP SYNTHASE FROM S. CEREVISIAE WITH CO2+, PEP AND THE E4P ANALOGOUE G3P
OverviewOverview
3-Deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthases are, metal-dependent enzymes that catalyse the first committed step in the, biosynthesis of aromatic amino acids in microorganisms and plants, the, condensation of 2-phophoenolpyruvate (PEP) and d-erythrose 4-phosphate, (E4P) to DAHP. The DAHP synthases are possible targets for fungicides and, represent a model system for feedback regulation in metabolic pathways. To, gain further insight into the role of the metal ion and the catalytic, mechanism in general, the crystal structures of several complexes between, the tyrosine-regulated form of DAHP synthase from Saccharomyces cerevisiae, and different metal ions and ligands have been determined. The crystal, structures provide evidence that the simultaneous presence of a metal ion, and PEP result in an ordering of the protein into a conformation that is, prepared for binding the second substrate E4P. The site and binding mode, of E4P was derived from the 1.5A resolution crystal structure of DAHP, synthase in complex with PEP, Co2+, and the E4P analogue glyceraldehyde, 3-phosphate. Our data suggest that the oxygen atom of the reactive, carbonyl group of E4P replaces a water molecule coordinated to the metal, ion, strongly favouring a reaction mechanism where the initial step is a, nucleophilic attack of the double bond of PEP on the metal-activated, carbonyl group of E4P. Mutagenesis experiments substituting specific amino, acids coordinating PEP, the divalent metal ion or the second substrate, E4P, result in stable but inactive Aro4p-derivatives and show the, importance of these residues for the catalytic mechanism.
About this StructureAbout this Structure
1OF8 is a Single protein structure of sequence from Saccharomyces cerevisiae with CO, PEP, G3P and GOL as ligands. Active as Transferred entry: 2.5.1.54, with EC number 4.1.2.15 Known structural/functional Site: . Full crystallographic information is available from OCA.
ReferenceReference
Substrate and metal complexes of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase from Saccharomyces cerevisiae provide new insights into the catalytic mechanism., Konig V, Pfeil A, Braus GH, Schneider TR, J Mol Biol. 2004 Mar 26;337(3):675-90. PMID:15019786
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