1z34: Difference between revisions

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[[Image:1z34.gif|left|200px]]
[[Image:1z34.gif|left|200px]]


{{Structure
<!--
|PDB= 1z34 |SIZE=350|CAPTION= <scene name='initialview01'>1z34</scene>, resolution 2.40&Aring;
The line below this paragraph, containing "STRUCTURE_1z34", creates the "Structure Box" on the page.
|SITE=
You may change the PDB parameter (which sets the PDB file loaded into the applet)
|LIGAND= <scene name='pdbligand=2FD:5-(6-AMINO-2-FLUORO-PURIN-9-YL)-2-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-OL'>2FD</scene>
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Purine-nucleoside_phosphorylase Purine-nucleoside phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.1 2.4.2.1] </span>
or leave the SCENE parameter empty for the default display.
|GENE=  
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|DOMAIN=
{{STRUCTURE_1z34| PDB=1z34  | SCENE= }}  
|RELATEDENTRY=[[1z33|1Z33]], [[1z35|1Z35]], [[1z36|1Z36]], [[1z37|1Z37]], [[1z38|1Z38]], [[1z39|1Z39]]
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1z34 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z34 OCA], [http://www.ebi.ac.uk/pdbsum/1z34 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1z34 RCSB]</span>
}}


'''Crystal structure of Trichomonas vaginalis purine nucleoside phosphorylase complexed with 2-fluoro-2'-deoxyadenosine'''
'''Crystal structure of Trichomonas vaginalis purine nucleoside phosphorylase complexed with 2-fluoro-2'-deoxyadenosine'''
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==About this Structure==
==About this Structure==
1Z34 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Trichomonas_vaginalis Trichomonas vaginalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z34 OCA].  
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z34 OCA].  


==Reference==
==Reference==
Identification of a subversive substrate of Trichomonas vaginalis purine nucleoside phosphorylase and the crystal structure of the enzyme-substrate complex., Zang Y, Wang WH, Wu SW, Ealick SE, Wang CC, J Biol Chem. 2005 Jun 10;280(23):22318-25. Epub 2005 Apr 7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15817485 15817485]
Identification of a subversive substrate of Trichomonas vaginalis purine nucleoside phosphorylase and the crystal structure of the enzyme-substrate complex., Zang Y, Wang WH, Wu SW, Ealick SE, Wang CC, J Biol Chem. 2005 Jun 10;280(23):22318-25. Epub 2005 Apr 7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15817485 15817485]
[[Category: Protein complex]]
[[Category: Purine-nucleoside phosphorylase]]
[[Category: Purine-nucleoside phosphorylase]]
[[Category: Trichomonas vaginalis]]
[[Category: Ealick, S E.]]
[[Category: Ealick, S E.]]
[[Category: Wang, C C.]]
[[Category: Wang, C C.]]
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[[Category: Wu, S W.]]
[[Category: Wu, S W.]]
[[Category: Zhang, Y.]]
[[Category: Zhang, Y.]]
[[Category: alpha-beta-alpha sandwich]]
[[Category: Alpha-beta-alpha sandwich]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 17:07:35 2008''
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:28:22 2008''

Revision as of 17:07, 3 May 2008

File:1z34.gif

Template:STRUCTURE 1z34

Crystal structure of Trichomonas vaginalis purine nucleoside phosphorylase complexed with 2-fluoro-2'-deoxyadenosine


OverviewOverview

Trichomonas vaginalis is an anaerobic protozoan parasite that causes trichomoniasis, a common sexually transmitted disease with worldwide impact. One of the pivotal enzymes in its purine salvage pathway, purine nucleoside phosphorylase (PNP), shows physical properties and substrate specificities similar to those of the high molecular mass bacterial PNPs but differing from those of human PNP. While carrying out studies to identify inhibitors of T. vaginalis PNP (TvPNP), we discovered that the nontoxic nucleoside analogue 2-fluoro-2'-deoxyadenosine (F-dAdo) is a "subversive substrate." Phosphorolysis by TvPNP of F-dAdo, which is not a substrate for human PNP, releases highly cytotoxic 2-fluoroadenine (F-Ade). In vitro studies showed that both F-dAdo and F-Ade exert strong inhibition of T. vaginalis growth with estimated IC(50) values of 106 and 84 nm, respectively, suggesting that F-dAdo might be useful as a potential chemotherapeutic agent against T. vaginalis. To understand the basis of TvPNP specificity, the structures of TvPNP complexed with F-dAdo, 2-fluoroadenosine, formycin A, adenosine, inosine, or 2'-deoxyinosine were determined by x-ray crystallography with resolutions ranging from 2.4 to 2.9 A. These studies showed that the quaternary structure, monomer fold, and active site are similar to those of Escherichia coli PNP. The principal active site difference is at Thr-156, which is alanine in E. coli PNP. In the complex of TvPNP with F-dAdo, Thr-156 causes the purine base to tilt and shift by 0.5 A as compared with the binding scheme of F-dAdo in E. coli PNP. The structures of the TvPNP complexes suggest opportunities for further improved subversive substrates beyond F-dAdo.

About this StructureAbout this Structure

Full crystallographic information is available from OCA.

ReferenceReference

Identification of a subversive substrate of Trichomonas vaginalis purine nucleoside phosphorylase and the crystal structure of the enzyme-substrate complex., Zang Y, Wang WH, Wu SW, Ealick SE, Wang CC, J Biol Chem. 2005 Jun 10;280(23):22318-25. Epub 2005 Apr 7. PMID:15817485 Page seeded by OCA on Sat May 3 17:07:35 2008

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