Proteopedia:Wishlist: Difference between revisions

Angel Herraez (talk | contribs)
assembly vs. asymmetric unit implemented
Angel Herraez (talk | contribs)
animated images
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** Change the subject of the report email message to the student's name, and the summary score.
** Change the subject of the report email message to the student's name, and the summary score.


* '''Automatic Animations''': A mechanism to create a button that generates, in Jmol, an animation made from all the green links on the page (or a subset of them from a checkbox list?). Thanks to Lynmarie Thompson for this suggestion. [[User:Eric Martz|Eric Martz]] 19:06, 11 November 2009 (IST)
* '''Automatic Animations''': A mechanism to create a button that generates, in Jmol, an animation made from all the green links on the page (or a subset of them from a checkbox list?). Thanks to Lynmarie Thompson for this suggestion. [[User:Eric Martz|Eric Martz]] 19:06, 11 November 2009 (IST) <span style="color:brown">See partial solution below.</span>


* Automatically '''front, center, and size''' ligands and sites when their green links are clicked. That is, the molecule should rotate to put the selected entity in front of its center of mass, the selected entity should become the center of rotation/zoom, and the molecule should be zoomed (up or down) to make the selected entity fill e.g. 75% of the Jmol diameter.
* Automatically '''front, center, and size''' ligands and sites when their green links are clicked. That is, the molecule should rotate to put the selected entity in front of its center of mass, the selected entity should become the center of rotation/zoom, and the molecule should be zoomed (up or down) to make the selected entity fill e.g. 75% of the Jmol diameter.
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===Items Solved===
===Items Solved===
* <span style="background-color:yellow;color:green">'''SOLVED IN PART:'''</span> '''Automatic Animations''': A mechanism to create a button that generates, in Jmol, an animation made from all the green links on the page (or a subset of them from a checkbox list?). Thanks to Lynmarie Thompson for this suggestion. [[User:Eric Martz|Eric Martz]] 19:06, 11 November 2009 (IST)
:<span style="color:brown;">'''SOLUTION:'''</span> Each JSmol panel has a button that any user can click to produce an animate image on that scene (one at a time). Also, for seeded pages such animation will be displayed in the page initially, in place of the model. [[User:Angel Herraez|Angel_Herraez]] 08:41, 17 June 2017 (UTC)


* <span style="background-color:yellow;color:green">'''SOLVED:'''</span>  '''Biological units''' (from RCSB) should be the default initial scenes, with a view of the asymmetric unit optional, as agreed in discussion. Eric Martz plans to provide a mock-up of an advanced page that would have views from EBI PQS, EBI PISA, and RCSB biological units, with brief explanations of each.  
* <span style="background-color:yellow;color:green">'''SOLVED:'''</span>  '''Biological units''' (from RCSB) should be the default initial scenes, with a view of the asymmetric unit optional, as agreed in discussion. Eric Martz plans to provide a mock-up of an advanced page that would have views from EBI PQS, EBI PISA, and RCSB biological units, with brief explanations of each.  

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Eran Hodis, Eric Martz, Emily Forschler, Kevin Karplus, Jaime Prilusky, Greg Black, Ralf Stephan, Karl Oberholser, Angel Herraez, Karsten Theis