ATPase: Difference between revisions
Michal Harel (talk | contribs) No edit summary |
Michal Harel (talk | contribs) No edit summary |
||
| Line 66: | Line 66: | ||
*''F1F0 ATPase α, β subunits'' | *''F1F0 ATPase α, β subunits'' | ||
**[1sky]] – BsF1-ATPS – Bacillus sp. Ps3 | **[1sky]] – BsF1-ATPS – Bacillus sp. Ps3<br /> | ||
**[[5cdf]] – PdATPase - ''Paracoccus denitrificans''<br /> | |||
*''F1F0 ATPase α,γ subunits'' | *''F1F0 ATPase α,γ subunits'' | ||
| Line 86: | Line 87: | ||
*''F1F0 ATPase α, β, γ subunits'' | *''F1F0 ATPase α, β, γ subunits'' | ||
**[[1ohh]], [[2jiz]], [[4tt3]], [[4tsf]] – bF1-ATPS+ IF1 inhibitor – bovine<br /> | **[[1ohh]], [[2jiz]], [[4tt3]], [[4tsf]], [[4z1m]] – bF1-ATPS+ IF1 inhibitor – bovine<br /> | ||
**[[1e1q]], [[2w6e]], [[2w6f]], [[2w6g]], [[2w6h]], [[2w6i]], [[2w6j]] - bF1-ATPS<br /> | **[[1e1q]], [[2w6e]], [[2w6f]], [[2w6g]], [[2w6h]], [[2w6i]], [[2w6j]] - bF1-ATPS<br /> | ||
**[[1e1r]] - bF1-ATPS+Mg+ADP+AlF4<br /> | **[[1e1r]] - bF1-ATPS+Mg+ADP+AlF4<br /> | ||
| Line 101: | Line 102: | ||
**[[1jnv]] - EcF1-ATPS <br /> | **[[1jnv]] - EcF1-ATPS <br /> | ||
**[[3oaa]] – EcF1-ATPS (mutant)<br /> | **[[3oaa]] – EcF1-ATPS (mutant)<br /> | ||
**[[2qe7]] – F1-ATPS – ''Bacillus''<br /> | **[[2qe7]], [[4xd7]] – F1-ATPS – ''Bacillus''<br /> | ||
**[[5ik2]], [[5hkk]] – F1-ATPS – ''Cakdalkalibacillus thermarum''<br /> | |||
*''F1F0 ATPase α, β, γ, δ, ε subunits'' | *''F1F0 ATPase α, β, γ, δ, ε subunits'' | ||
| Line 107: | Line 109: | ||
**[[4asu]], [[2jdi]], [[2jj1]], [[2jj2]] - bF1-ATPS<br /> | **[[4asu]], [[2jdi]], [[2jj1]], [[2jj2]] - bF1-ATPS<br /> | ||
**[[2v7q]], [[1e79]], [[2ck3]] - bF1-ATPS+inhibitor<br /> | **[[2v7q]], [[1e79]], [[2ck3]] - bF1-ATPS+inhibitor<br /> | ||
**[[4yxw]] - bF1-ATPS+ ANP<br /> | |||
**[[2xnd]], [[2xok]] - bF1-ATPS+ATPS lipid-binding protein<br /> | **[[2xnd]], [[2xok]] - bF1-ATPS+ATPS lipid-binding protein<br /> | ||
**[[2wpd]], [[2wss]] - yF1-ATPS+subunit 9+Mg+ADP+ATP - yeast<br /> | **[[2wpd]], [[2wss]] - yF1-ATPS+subunit 9+Mg+ADP+ATP - yeast<br /> | ||
| Line 118: | Line 121: | ||
**[[4b2q]] – yATPase subunits α,β,γ,δ,ε +9,B,D,6,O – Cryo EM | **[[4b2q]] – yATPase subunits α,β,γ,δ,ε +9,B,D,6,O – Cryo EM | ||
*''F1F0 ATPase α,β,γ,δ,ε,A,C subunits'' | |||
**[[5dn6]] – PdATPase + zeta inhibitor protein <br /> | |||
*''F1F0 ATPase α,β,γ,δ,ε,A,B,C subunits'' | |||
**[[5t4q]], [[5t4p]], [[5t4o]] – EcATPase – Cryo EM<br /> | |||
*''F1F0 ATPase α,β,γ,δ,ε,A,B,C,D,F,H,AAP1 subunits'' | |||
**[[5lqz]], [[5lqy]], [[5lqx]] – ATPase + ATPase inhibitor protein – ''Ogataea angusta'' - Cryo EM<br /> | |||
*''F1F0 ATPase α,β,γ,δ,ε,B1,C1,D,O subunits'' | |||
**[[5fil]], [[5fik]], [[5fij]], [[5ari]], [[5arh]], [[5are]], [[5ara]] – bATPase – Cryo EM<br /> | |||
**[[1bmf]] - bF1-ATPS<br /> | **[[1bmf]] - bF1-ATPS<br /> | ||
| Line 132: | Line 152: | ||
**[[3i72]], [[3i73]], [[3ikj]] - TtATPS subunit A (mutant)<br /> | **[[3i72]], [[3i73]], [[3ikj]] - TtATPS subunit A (mutant)<br /> | ||
**[[4o1s]] - ATPS subunit A – ''Thermoplasma volcanium''<br /> | **[[4o1s]] - ATPS subunit A – ''Thermoplasma volcanium''<br /> | ||
**[[5i1m]] – yATPase <br /> | |||
**[[5bn5]] – NeATPase + NEQ263 – ''Nanoarchaeum equitans'' <br /> | |||
**[[5bn4]] – NeATPase + NEQ263 + ANP <br /> | |||
**[[5bn3]] – NeATPase + NEQ263 + ADP <br /> | |||
*''V-ATPase subunit B'' | *''V-ATPase subunit B'' | ||
| Line 181: | Line 205: | ||
*''V-ATPase subunit K'' | *''V-ATPase subunit K'' | ||
**[[2bl2]], [[2cyd]] - | **[[2bl2]], [[2cyd]] - EhATPS subunit K – ''Enterococcus hirae''<br /> | ||
*''V-ATPase subunit I'' | *''V-ATPase subunit I'' | ||
**[[3rrk]] – ATPS subunit I N terminal – ''Meiothermus ruber'' | **[[3rrk]] – ATPS subunit I N terminal – ''Meiothermus ruber'' | ||
*''V-ATPase multi subunits'' | |||
**[[4dl0]], [[4efa]] - yATPase subunits C,G,E<br /> | **[[4dl0]], [[4efa]] - yATPase subunits C,G,E<br /> | ||
**[[3w3a]] - yATPS subunit A,B,D,F<br /> | **[[3w3a]] - yATPS subunit A,B,D,F<br /> | ||
**[[5tj5]] - yATPS subunit A,C,C’,C’’,D,E,F<br /> | |||
**[[5bw9]] - yATPS subunit A,B,D,E,G,H – Cryo EM<br /> | |||
**[[5d80]] - yATPS subunit A,B,D,E,F,G,H<br /> | |||
**[[3a5c]], [[3a5d]] - TtATPS subunit A,B,D,F<br /> | **[[3a5c]], [[3a5d]] - TtATPS subunit A,B,D,F<br /> | ||
**[[5tsj]] - TtATPS subunit A,B,C,D,E,F,G + antibody - Cryo-EM<br /> | |||
**[[5gas]], [[5gar]] - TtATPS subunit A,B,C,D,E,F,G,I - Cryo-EM<br /> | |||
**[[3gqb]] - TtATPS subunit A (mutant),B (mutant)<br /> | **[[3gqb]] - TtATPS subunit A (mutant),B (mutant)<br /> | ||
**[[3k5b]] - TtATPS subunit E (mutant)+C<br /> | **[[3k5b]] - TtATPS subunit E (mutant)+C<br /> | ||
**[[5knd]], [[5knc]], [[5knb]] - EhATPS subunit A,B,D,F<br /> | |||
*'''P-ATPase''' | *'''P-ATPase''' | ||
| Line 206: | Line 238: | ||
**[[1aw0]], [[2aw0]] - hATPase 4th MBD – NMR<br /> | **[[1aw0]], [[2aw0]] - hATPase 4th MBD – NMR<br /> | ||
**[[1kvi]], [[1kvj]] - hATPase 1st MBD – NMR<br /> | **[[1kvi]], [[1kvj]] - hATPase 1st MBD – NMR<br /> | ||
**[[5t7l]] - hATPase 1st MBD + Cu transport protein<br /> | |||
**[[3dxs]] - AtATPase MBD – ''Arabidopsis thaliana''<br /> | **[[3dxs]] - AtATPase MBD – ''Arabidopsis thaliana''<br /> | ||
**[[3voy]] - AfATPase – Archaeoglobus fulgidus – CryoEM<br /> | **[[3voy]] - AfATPase – Archaeoglobus fulgidus – CryoEM<br /> | ||
| Line 237: | Line 270: | ||
**[[2b8e]] - AfATPase CopA NBD<br /> | **[[2b8e]] - AfATPase CopA NBD<br /> | ||
**[[2xze]] - SaATPase<br /> | **[[2xze]] - SaATPase<br /> | ||
**[[5aw9]], [[5aw8]], [[5aw7]], [[5aw6]], [[5aw5]], [[5aw4]], [[5aw3]], [[5aw2]], [[5aw1]], [[5aw0]], [[5avz]], [[5avy]], [[5avx]], [[5avw]], [[5avv]], [[5avu]], [[5avt]], [[5avs]], [[5avr]], [[5avq]] – SaATPase + phospholemman-like protein<br /> | |||
**[[4xe5]] - bATPase <br /> | |||
**[[1mo8]], [[1mo7]] - ATPase α-1 – rat<br /> | **[[1mo8]], [[1mo7]] - ATPase α-1 – rat<br /> | ||
**[[1q3i]] - pATPase NBD<br /> | **[[1q3i]] - pATPase NBD<br /> | ||
| Line 256: | Line 291: | ||
**[[2zbd]], [[3ar8]] - rATPase+AlF4+nucleotide+Ca<br /> | **[[2zbd]], [[3ar8]] - rATPase+AlF4+nucleotide+Ca<br /> | ||
**[[3ar9]] - rATPase+BeF3+nucleotide<br /> | **[[3ar9]] - rATPase+BeF3+nucleotide<br /> | ||
**[[2dqs]], [[3ar2]], [[1vfp]] - rATPase+AMPPCP<br /> | **[[2dqs]], [[3ar2]], [[1vfp]], [[4xou]] - rATPase+AMPPCP<br /> | ||
**[[5a3r]] - rATPase + BeF3 + AMPPCP<br /> | |||
**[[2c88]], [[2c8k]], [[3ar4]], [[3ar3]], [[3ar5]], [[3ar7]] - rATPase+nucleotide+TG<br /> | **[[2c88]], [[2c8k]], [[3ar4]], [[3ar3]], [[3ar5]], [[3ar7]] - rATPase+nucleotide+TG<br /> | ||
**[[2ear]], [[2c8l]] - rATPase+TG<br /> | **[[2ear]], [[2c8l]] - rATPase+TG<br /> | ||
| Line 274: | Line 310: | ||
**[[1t5t]] - rATPase Ca2E1 state+ADP+AlF4<br /> | **[[1t5t]] - rATPase Ca2E1 state+ADP+AlF4<br /> | ||
**[[1su4]] - rATPase +2Ca2<br /> | **[[1su4]] - rATPase +2Ca2<br /> | ||
**[[2by4]], [[2yfy]], [[3nal]], [[3nam]], [[3nan]], [[4uu1]], [[4uu0]], [[4j2t]] - rATPase HNE2 state+thapsigargin derivative | **[[2by4]], [[2yfy]], [[3nal]], [[3nam]], [[3nan]], [[4uu1]], [[4uu0]], [[4j2t]], [[5a3s]] - rATPase HNE2 state+thapsigargin derivative<br /> | ||
**[[5a3q]] - rATPase + thapsigargin derivative + AMPPCP<br /> | |||
**[[4ycn]], [[4ycm]] - rATPase + macrolide<br /> | |||
**[[4y3u]] - rATPase + phospholamban<br /> | |||
*''Zn+2 transporting ATPase'' | *''Zn+2 transporting ATPase'' | ||
| Line 293: | Line 332: | ||
**[[1ii9]] - EcATPase<br /> | **[[1ii9]] - EcATPase<br /> | ||
**[[3h84]], [[3idq]], [[3a36]], [[3a37]] - yATPase GET3 <br /> | **[[3h84]], [[3idq]], [[3a36]], [[3a37]] - yATPase GET3 <br /> | ||
**[[4pwx]] - yATPase GET3 + golgi to ER traffic protein + ubiquitin-like protein <br /> | **[[4pwx]], [[5bwk]] - yATPase GET3 + golgi to ER traffic protein + ubiquitin-like protein <br /> | ||
**[[5bw8]] - yATPase GET3 + golgi to ER traffic protein + ubiquitin-like protein + protein<br /> | |||
**[[4xwo]] - yATPase GET3 + antibody + Sec22<br /> | |||
**[[4xvu]] - yATPase GET3 + antibody + NYV1<br /> | |||
**[[4xtr]] - yATPase GET3 + antibody + pep12p<br /> | |||
**[[3sja]], [[3sjb]], [[3sjc]], [[3sjd]], [[3zs8]], [[3zs9]], [[3b2e]], [[3vlc]] - yATPase GET3 + GET1 cystolic domain<br /> | **[[3sja]], [[3sjb]], [[3sjc]], [[3sjd]], [[3zs8]], [[3zs9]], [[3b2e]], [[3vlc]] - yATPase GET3 + GET1 cystolic domain<br /> | ||
**[[3ibg]] - ATPase GET3 – ''Aspergillus fumigatus'' | **[[3ibg]] - ATPase GET3 – ''Aspergillus fumigatus'' | ||
| Line 334: | Line 377: | ||
**[[3cf0]], [[3cf1]], [[3cf3]] – mATPase NBD+ADP – mouse<br /> | **[[3cf0]], [[3cf1]], [[3cf3]] – mATPase NBD+ADP – mouse<br /> | ||
**[[3cf2]] - mATPase NBD+ADP+AMP-PNP<br /> | **[[3cf2]] - mATPase NBD+ADP+AMP-PNP<br /> | ||
**[[2r31]], [[2p4x]] – PdATPase ATP12 | **[[2r31]], [[2p4x]] – PdATPase ATP12 <br /> | ||
**[[2zd2]] – PdATPase (mutant) ATP12<br /> | **[[2zd2]] – PdATPase (mutant) ATP12<br /> | ||
**[[1d8s]] – EcATPase F1<br /> | **[[1d8s]] – EcATPase F1<br /> | ||
**[[1vdz]] – PhATPase subunit A – ''Pyrococcus horikoshii''<br /> | **[[1vdz]] – PhATPase subunit A – ''Pyrococcus horikoshii''<br /> | ||
*''Monosaccharide transporting ATPase'' | |||
**[[5dte]] – AsATPase – ''Actinobacillus succinogenes''<br /> | |||
**[[5zjp]] – AsATPase + ribopyranose<br /> | |||
*'''RNA-dependent ATPase''' | *'''RNA-dependent ATPase''' | ||
| Line 343: | Line 391: | ||
**[[3eaq]], [[3i31]], [[3i32]] – TtATPase fragment<br /> | **[[3eaq]], [[3i31]], [[3i32]] – TtATPase fragment<br /> | ||
**[[4kbg]], [[4kbf]] - TtATPase helicase core domain<br /> | **[[4kbg]], [[4kbf]] - TtATPase helicase core domain<br /> | ||
**[[5mao]] - TtATPase RRM domain <br /> | |||
**[[4i69]], [[4i68]] - TtATPase RRM domain (mutant)<br /> | **[[4i69]], [[4i68]] - TtATPase RRM domain (mutant)<br /> | ||
**[[4i67]] - TtATPase RRM domain + RNA<br /> | **[[4i67]] - TtATPase RRM domain + RNA<br /> | ||
| Line 349: | Line 398: | ||
**[[3mwl]] - TtATPase N-terminal (mutant) + 8-oxoadenine<br /> | **[[3mwl]] - TtATPase N-terminal (mutant) + 8-oxoadenine<br /> | ||
**[[3nej]] - TtATPase reca-like domain (mutant) | **[[3nej]] - TtATPase reca-like domain (mutant) | ||
*ATP-dependent ATPase | |||
**[[5txv]] – EcATPase subunit HSLU<br /> | |||
**[[5ji3]], [[5ji2]] – EcATPase subunits HSLU+HSLV<br /> | |||
*'''Proteasome-associated ATPase''' | *'''Proteasome-associated ATPase''' | ||
| Line 358: | Line 412: | ||
*'''Transitional endoplasmic reticulum ATPase''' | *'''Transitional endoplasmic reticulum ATPase''' | ||
**[[3hu1]], [[3hu2]], [[3hu3]] – hTer-ATPase + ATPGS<br /> | **[[5c19]] – hTer-ATPase (mutant) <br /> | ||
**[[4ko8]], [[4kln]] – hTer-ATPase (mutant) + ATPGS<br /> | **[[3hu1]], [[3hu2]], [[3hu3]], [[5ftn]], [[5ftm]], [[5ftl]], [[5ftk]], [[5ftj]] – hTer-ATPase + ATPGS<br /> | ||
**[[4ko8]], [[4kln]], [[5dyg]], [[5c18]] – hTer-ATPase (mutant) + ATPGS<br /> | |||
**[[5dyi]] – hTer-ATPase + ADP<br /> | |||
**[[4kod]] – hTer-ATPase (mutant) + ADP<br /> | **[[4kod]] – hTer-ATPase (mutant) + ADP<br /> | ||
**[[3qc8]], [[3qq8]], [[3qwz]] - hTer-ATPase N terminal + FAS-associated factor 1<br /> | **[[3qc8]], [[3qq8]], [[3qwz]] - hTer-ATPase N terminal + FAS-associated factor 1<br /> | ||
**[[3qq7]] - hTer-ATPase N terminal<br /> | **[[3qq7]] - hTer-ATPase N terminal<br /> | ||
**[[3tiw]] - hTer-ATPase N terminal + E3 ubiquitin-protein ligase peptide | **[[3tiw]] - hTer-ATPase N terminal + E3 ubiquitin-protein ligase peptide<br /> | ||
**[[5c1b]] - hTer-ATPase N terminal + UFD1--SHP peptide<br /> | |||
**[[5glf]] - hTer-ATPase N terminal + derlin-1 peptide<br /> | |||
**[[5epp]] - hTer-ATPase N terminal + rhomboid-related protein 4 peptide<br /> | |||
**[[4kdl]], [[4kdi]] - hTer-ATPase N terminal + ubiquitin thioesterase OTU1<br /> | **[[4kdl]], [[4kdi]] - hTer-ATPase N terminal + ubiquitin thioesterase OTU1<br /> | ||
**[[5b6c]] - hTer-ATPase N terminal + ubiquitin fusion degradation protein<br /> | |||
**[[5ifw]], [[5ifs]] - hTer-ATPase + tether containing UBX domain<br /> | |||
**[[1s3s]] - mTer-ATPase ND1 domain + P47 C terminal<br /> | **[[1s3s]] - mTer-ATPase ND1 domain + P47 C terminal<br /> | ||
**[[4rv0]] - Ter-ATPase N terminal + nuclear protein localization protein – ''Drosophila melanogaster''<br /> | |||
*'''LAO/AO transport system ATPase''' | *'''LAO/AO transport system ATPase''' | ||
| Line 376: | Line 438: | ||
**[[3auy]] - MjRad50 + ADP<br /> | **[[3auy]] - MjRad50 + ADP<br /> | ||
**[[3av0]] - MjRad50 + ATP<br /> | **[[3av0]] - MjRad50 + ATP<br /> | ||
**[[5f3w]] - MjRad50 + MRE11 + ATPGS<br /> | |||
**[[5dny]] - MjRad50 + MRE11 + DNA<br /> | |||
**[[3qg5]] – Rad50 NBD + MRE11 – ''Thermotoga maritima''<br /> | **[[3qg5]] – Rad50 NBD + MRE11 – ''Thermotoga maritima''<br /> | ||
**[[3qkr]], [[3qks]], [[3qf7]] - PfRad50 NBD + MRE11 – ''Pyrococcus furiosus''<br /> | **[[3qkr]], [[3qks]], [[3qf7]] - PfRad50 NBD + MRE11 – ''Pyrococcus furiosus''<br /> | ||
| Line 388: | Line 452: | ||
**[[2xj9]] – CcMipZ (mutant) | **[[2xj9]] – CcMipZ (mutant) | ||
* '''ATPase Rava''' | |||
**[[5fl2]], [[4upf]] – EcATPase LARA domain + lysine decarboxylase<br /> | |||
**[[4upb]] – EcATPase + lysine decarboxylase – Cryo EM<br /> | |||
**[[3nbx]] – EcATPase Rava + ADP | **[[3nbx]] – EcATPase Rava + ADP | ||