1dms: Difference between revisions
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[[Image:1dms.gif|left|200px]]<br /> | [[Image:1dms.gif|left|200px]]<br /><applet load="1dms" size="450" color="white" frame="true" align="right" spinBox="true" | ||
<applet load="1dms" size="450" color="white" frame="true" align="right" spinBox="true" | |||
caption="1dms, resolution 1.88Å" /> | caption="1dms, resolution 1.88Å" /> | ||
'''STRUCTURE OF DMSO REDUCTASE'''<br /> | '''STRUCTURE OF DMSO REDUCTASE'''<br /> | ||
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==About this Structure== | ==About this Structure== | ||
1DMS is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus] with PGD and MM4 as [http://en.wikipedia.org/wiki/ligands ligands]. | 1DMS is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus] with PGD and MM4 as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=MOL:Di Oxo Mo Center Of Cofactor'>MOL</scene> and <scene name='pdbsite=PGD:Q-Mgd Of Cofactor'>PGD</scene>. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1DMS OCA]. | ||
==Reference== | ==Reference== | ||
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[[Category: molydopterin]] | [[Category: molydopterin]] | ||
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Dec 18 14:44:46 2007'' | ||
Revision as of 15:34, 18 December 2007
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STRUCTURE OF DMSO REDUCTASE
OverviewOverview
The periplasmic dimethyl sulfoxide reductase (DMSOR) from the, photosynthetic purple bacterium Rhodobacter capsulatus functions as the, terminal electron acceptor in its respiratory chain. The enzyme catalyzes, the reduction of highly oxidized substrates like dimethyl sulfoxide to, dimethyl sulfide. At a molybdenum redox center, two single electrons are, transferred from cytochrome C556 to the substrate dimethyl sulfoxide, generating dimethyl sulfide and (with two protons) water. The enzyme was, purified and crystallized in space group P4(1)2(1)2 with unit cell, dimensions of a = b = 80.7 A and c = 229.2 A. The crystals diffract beyond, 1.8 A with synchrotron radiation. The three-dimensional structure was, solved by a combination of multiple isomorphous replacement and molecular, replacement techniques. The atomic model was refined to an R-factor of, 0.169 for 57,394 independent reflections. The spherical protein consists, of four domains with a funnel-like cavity that leads to the freely, accessible metal-ion redox center. The bis(molybdopterin guanine, dinucleotide) molybdenum cofactor (1541 Da) of the single chain protein, (85,033 Da) has the molybdenum ion bound to the cis-dithiolene group of, only one molybdopterin guanine dinucleotide molecule. Three additional, ligands, two oxo groups and the oxygen of a serine side-chain, are bound, to the molybdenum ion. The second molybdopterin system is not part of the, ligand sphere of the metal center with its sulfur atoms at distances of, 3.5 A and 3.8 A away. It might be involved in electron shuttling from the, protein surface to the molybdenum center.
About this StructureAbout this Structure
1DMS is a Single protein structure of sequence from Rhodobacter capsulatus with PGD and MM4 as ligands. Known structural/functional Sites: and . Full crystallographic information is available from OCA.
ReferenceReference
Crystal structure of dimethyl sulfoxide reductase from Rhodobacter capsulatus at 1.88 A resolution., Schneider F, Lowe J, Huber R, Schindelin H, Kisker C, Knablein J, J Mol Biol. 1996 Oct 18;263(1):53-69. PMID:8890912
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