4h3a: Difference between revisions

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 ==Structure of E. coli undecaprenyl diphosphate synthase in complex with BPH-1330==
-<StructureSection load='4h3a' size='340' side='right' caption='[[4h3a]], [[Resolution|resolution]] 1.98&Aring;' scene=''>
+<StructureSection load='4h3a' size='340' side='right'caption='[[4h3a]], [[Resolution|resolution]] 1.98&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4h3a]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H3A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4H3A FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4h3a]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H3A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4H3A FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0YY:(2Z)-2-HYDROXY-4-[4-(OCTYLOXY)PHENYL]-4-OXOBUT-2-ENOIC+ACID'>0YY</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0YY:(2Z)-2-HYDROXY-4-[4-(OCTYLOXY)PHENYL]-4-OXOBUT-2-ENOIC+ACID'>0YY</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4h2j|4h2j]], [[4h2m|4h2m]], [[4h2o|4h2o]], [[4h38|4h38]], [[4h3c|4h3c]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4h3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h3a OCA], [https://pdbe.org/4h3a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4h3a RCSB], [https://www.ebi.ac.uk/pdbsum/4h3a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4h3a ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">uppS, ispU, rth, yaeS, b0174, JW0169 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ditrans,polycis-undecaprenyl-diphosphate_synthase_((2E,6E)-farnesyl-_diphosphate_specific) Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl- diphosphate specific)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.31 2.5.1.31] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4h3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h3a OCA], [http://pdbe.org/4h3a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4h3a RCSB], [http://www.ebi.ac.uk/pdbsum/4h3a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4h3a ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/UPPS_ECOLI UPPS_ECOLI]] Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate (FPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.<ref>PMID:12756244</ref>
+[https://www.uniprot.org/uniprot/UPPS_ECOLI UPPS_ECOLI] Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate (FPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.<ref>PMID:12756244</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 28: / Line 25: @@
 __TOC__
 </StructureSection>
-[[Category: Bacillus coli migula 1895]]
+[[Category: Escherichia coli]]
-[[Category: Oldfield, E]]
+[[Category: Large Structures]]
-[[Category: Zhu, W]]
+[[Category: Oldfield E]]
-[[Category: Alpha-helix]]
+[[Category: Zhu W]]
-[[Category: Cell wall biosynthesis]]
-[[Category: Farnesyl diphosphate binding]]
-[[Category: Isopentenyl diphosphate binding]]
-[[Category: Prenyl transferase]]
-[[Category: Prenyl transferase inhibitor complex]]
-[[Category: Transferase-transferase inhibitor complex]]