3nuq: Difference between revisions

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OCA

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 ==Structure of a putative nucleotide phosphatase from Saccharomyces cerevisiae==
-<StructureSection load='3nuq' size='340' side='right' caption='[[3nuq]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
+<StructureSection load='3nuq' size='340' side='right'caption='[[3nuq]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3nuq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NUQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3NUQ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3nuq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NUQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NUQ FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SDT1, SSM1, YGL224C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/5'-nucleotidase 5'-nucleotidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.5 3.1.3.5] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nuq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nuq OCA], [https://pdbe.org/3nuq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nuq RCSB], [https://www.ebi.ac.uk/pdbsum/3nuq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nuq ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3nuq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nuq OCA], [http://pdbe.org/3nuq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3nuq RCSB], [http://www.ebi.ac.uk/pdbsum/3nuq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3nuq ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/SDT1_YEAST SDT1_YEAST]] Could be an enzyme that inactivates 6-azauracil by modifying it.
+[https://www.uniprot.org/uniprot/SDT1_YEAST SDT1_YEAST] Could be an enzyme that inactivates 6-azauracil by modifying it.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nu/3nuq_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nu/3nuq_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 23: / Line 22: @@
 __TOC__
 </StructureSection>
-[[Category: 5'-nucleotidase]]
+[[Category: Large Structures]]
-[[Category: Baker's yeast]]
+[[Category: Saccharomyces cerevisiae S288C]]
-[[Category: Brown, G]]
+[[Category: Brown G]]
-[[Category: Dong, A]]
+[[Category: Dong A]]
-[[Category: Edwards, A M]]
+[[Category: Edwards AM]]
-[[Category: Evdokimova, E]]
+[[Category: Evdokimova E]]
-[[Category: Joachimiak, A]]
+[[Category: Joachimiak A]]
-[[Category: Kudritsdka, M]]
+[[Category: Kudritsdka M]]
-[[Category: Structural genomic]]
+[[Category: Savchenko A]]
-[[Category: Savchenko, A]]
+[[Category: Singer AU]]
-[[Category: Singer, A U]]
+[[Category: Yakunin AF]]
-[[Category: Yakunin, A F]]
+[[Category: Yang C]]
-[[Category: Yang, C]]
-[[Category: Alpha-beta hydrolase]]
-[[Category: Hydrolase]]
-[[Category: Mcsg]]
-[[Category: Metal dependent]]
-[[Category: PSI, Protein structure initiative]]
-[[Category: Pyrimidine nucleotidase]]
-[[Category: Resistance to pyrimidine derivative]]
-[[Category: Suppresses the 6-au sensitivity of transcription elongation factor s-ii]]