3gmf: Difference between revisions

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==Crystal structure of protein-disulfide isomerase from Novosphingobium aromaticivorans==
==Crystal structure of protein-disulfide isomerase from Novosphingobium aromaticivorans==
<StructureSection load='3gmf' size='340' side='right' caption='[[3gmf]], [[Resolution|resolution]] 1.76&Aring;' scene=''>
<StructureSection load='3gmf' size='340' side='right' caption='[[3gmf]], [[Resolution|resolution]] 1.76&Aring;' scene=''>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Saro_0958 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=279238 NOVAD])</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Saro_0958 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=279238 NOVAD])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gmf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gmf OCA], [http://pdbe.org/3gmf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gmf RCSB], [http://www.ebi.ac.uk/pdbsum/3gmf PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3gmf TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gmf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gmf OCA], [http://pdbe.org/3gmf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gmf RCSB], [http://www.ebi.ac.uk/pdbsum/3gmf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gmf ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3gmf TOPSAN]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
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Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gm/3gmf_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gm/3gmf_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>

Revision as of 09:05, 7 December 2018

Crystal structure of protein-disulfide isomerase from Novosphingobium aromaticivoransCrystal structure of protein-disulfide isomerase from Novosphingobium aromaticivorans

Structural highlights

3gmf is a 1 chain structure with sequence from Novad. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Gene:Saro_0958 (NOVAD)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3gmf, resolution 1.76Å

Drag the structure with the mouse to rotate

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OCA