2yzg: Difference between revisions

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==Crystal structure of D-ALA:D-ALA Ligase from Thermus thermophilus HB8==
==Crystal structure of D-ALA:D-ALA Ligase from Thermus thermophilus HB8==
<StructureSection load='2yzg' size='340' side='right' caption='[[2yzg]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='2yzg' size='340' side='right' caption='[[2yzg]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] </span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yzg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yzg OCA], [http://pdbe.org/2yzg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yzg RCSB], [http://www.ebi.ac.uk/pdbsum/2yzg PDBsum], [http://www.topsan.org/Proteins/RSGI/2yzg TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yzg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yzg OCA], [http://pdbe.org/2yzg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yzg RCSB], [http://www.ebi.ac.uk/pdbsum/2yzg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yzg ProSAT], [http://www.topsan.org/Proteins/RSGI/2yzg TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/2yzg_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/2yzg_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>

Revision as of 12:08, 17 October 2018

Crystal structure of D-ALA:D-ALA Ligase from Thermus thermophilus HB8Crystal structure of D-ALA:D-ALA Ligase from Thermus thermophilus HB8

Structural highlights

2yzg is a 3 chain structure with sequence from Thet8. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
NonStd Res:
Activity:D-alanine--D-alanine ligase, with EC number 6.3.2.4
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

[DDL_THET8] Cell wall formation.[HAMAP-Rule:MF_00047]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2yzg, resolution 2.30Å

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