1dxm: Difference between revisions

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[[Image:1dxm.gif|left|200px]]
[[Image:1dxm.gif|left|200px]]


{{Structure
<!--
|PDB= 1dxm |SIZE=350|CAPTION= <scene name='initialview01'>1dxm</scene>, resolution 2.60&Aring;
The line below this paragraph, containing "STRUCTURE_1dxm", creates the "Structure Box" on the page.
|SITE= <scene name='pdbsite=LP1:Lipoate+Cofactor+Of+Protein+Covalently+Bound+To+LYS+63+C+...'>LP1</scene> and <scene name='pdbsite=LP2:Lipoate+Cofactor+Of+Protein+Covalently+Bound+To+LYS+63+C+...'>LP2</scene>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
|LIGAND= <scene name='pdbligand=RED:DIHYDROLIPOIC+ACID'>RED</scene>
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
|ACTIVITY=  
or leave the SCENE parameter empty for the default display.
|GENE=  
-->
|DOMAIN=
{{STRUCTURE_1dxm| PDB=1dxm  | SCENE= }}  
|RELATEDENTRY=
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dxm OCA], [http://www.ebi.ac.uk/pdbsum/1dxm PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1dxm RCSB]</span>
}}


'''REDUCED FORM OF THE H PROTEIN FROM GLYCINE DECARBOXYLASE COMPLEX'''
'''REDUCED FORM OF THE H PROTEIN FROM GLYCINE DECARBOXYLASE COMPLEX'''
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[[Category: Faure, M.]]
[[Category: Faure, M.]]
[[Category: Neuburger, M.]]
[[Category: Neuburger, M.]]
[[Category: glycine decarboxylase]]
[[Category: Glycine decarboxylase]]
[[Category: mitochondria,]]
[[Category: Mitochondria]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May  2 14:24:09 2008''
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 19:50:48 2008''

Revision as of 14:24, 2 May 2008

File:1dxm.gif

Template:STRUCTURE 1dxm

REDUCED FORM OF THE H PROTEIN FROM GLYCINE DECARBOXYLASE COMPLEX


OverviewOverview

The glycine decarboxylase complex consists of four different component enzymes (P-, H-, T- and L-proteins). The 14-kDa lipoamide-containing H-protein plays a pivotal role in the complete sequence of reactions as its prosthetic group (lipoic acid) interacts successively with the three other components of the complex and undergoes a cycle of reductive methylamination, methylamine transfer and electron transfer. With the aim to understand the interaction between the H-protein and its different partners, we have previously determined the crystal structure of the oxidized and methylaminated forms of the H-protein. In the present study, we have crystallized the H-protein in its reduced state and the L-protein (lipoamide dehydrogenase or dihydrolipoamide dehydrogenase). The L-protein has been overexpressed in Escherichia coli and refolded from inclusion bodies in an active form. Crystals were obtained from the refolded L-protein and the structure has been determined by X-ray crystallography. This first crystal structure of a plant dihydrolipoamide dehydrogenase is similar to other known dihydrolipoamide dehydrogenase structures. The crystal structure of the H-protein in its reduced form has been determined and compared to the structure of the other forms of the protein. It is isomorphous to the structure of the oxidized form. In contrast with methylaminated H-protein where the loaded lipoamide arm was locked into a cavity of the protein, the reduced lipoamide arm appeared freely exposed to the solvent. Such a freedom is required to allow its targeting inside the hollow active site of L-protein. Our results strongly suggest that a direct interaction between the H- and L-proteins is not necessary for the reoxidation of the reduced lipoamide arm bound to the H-protein. This hypothesis is supported by biochemical data [Neuburger, M., Polidori, A.M., Pietre, E., Faure, M., Jourdain, A., Bourguignon, J., Pucci, B. & Douce, R. (2000) Eur. J. Biochem. 267, 2882-2889] and by small angle X-ray scattering experiments reported herein.

About this StructureAbout this Structure

1DXM is a Single protein structure of sequence from Pisum sativum. Full crystallographic information is available from OCA.

ReferenceReference

Interaction between the lipoamide-containing H-protein and the lipoamide dehydrogenase (L-protein) of the glycine decarboxylase multienzyme system 2. Crystal structures of H- and L-proteins., Faure M, Bourguignon J, Neuburger M, MacHerel D, Sieker L, Ober R, Kahn R, Cohen-Addad C, Douce R, Eur J Biochem. 2000 May;267(10):2890-8. PMID:10806386 Page seeded by OCA on Fri May 2 14:24:09 2008

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