1j4g: Difference between revisions

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==crystal structure analysis of the trichosanthin delta C7==
==crystal structure analysis of the trichosanthin delta C7==
<StructureSection load='1j4g' size='340' side='right' caption='[[1j4g]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='1j4g' size='340' side='right' caption='[[1j4g]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] </span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j4g OCA], [http://pdbe.org/1j4g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1j4g RCSB], [http://www.ebi.ac.uk/pdbsum/1j4g PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j4g OCA], [http://pdbe.org/1j4g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1j4g RCSB], [http://www.ebi.ac.uk/pdbsum/1j4g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1j4g ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j4/1j4g_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j4/1j4g_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>

Revision as of 12:11, 17 January 2018

crystal structure analysis of the trichosanthin delta C7crystal structure analysis of the trichosanthin delta C7

Structural highlights

1j4g is a 4 chain structure with sequence from Chinese cucumber. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Activity:rRNA N-glycosylase, with EC number 3.2.2.22
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[RIPT_TRIKI] Inactivates eukaryotic 60S ribosomal subunits.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1j4g, resolution 2.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA