1h8k: Difference between revisions
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==A-SPECTRIN SH3 DOMAIN A11V, V23L, M25V, V53I, V58L MUTANT== | ==A-SPECTRIN SH3 DOMAIN A11V, V23L, M25V, V53I, V58L MUTANT== | ||
<StructureSection load='1h8k' size='340' side='right' caption='[[1h8k]], [[Resolution|resolution]] 2.70Å' scene=''> | <StructureSection load='1h8k' size='340' side='right' caption='[[1h8k]], [[Resolution|resolution]] 2.70Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[1h8k]] is a 1 chain structure | <table><tr><td colspan='2'>[[1h8k]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1H8K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1H8K FirstGlance]. <br> | ||
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1aey|1aey]], [[1aj3|1aj3]], [[1bk2|1bk2]], [[1cun|1cun]], [[1e6g|1e6g]], [[1e6h|1e6h]], [[1e7o|1e7o]], [[1g2b|1g2b]], [[1hd3|1hd3]], [[1pwt|1pwt]], [[1qkx|1qkx]], [[1shg|1shg]], [[1tuc|1tuc]], [[1tud|1tud]]</td></tr> | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1aey|1aey]], [[1aj3|1aj3]], [[1bk2|1bk2]], [[1cun|1cun]], [[1e6g|1e6g]], [[1e6h|1e6h]], [[1e7o|1e7o]], [[1g2b|1g2b]], [[1hd3|1hd3]], [[1pwt|1pwt]], [[1qkx|1qkx]], [[1shg|1shg]], [[1tuc|1tuc]], [[1tud|1tud]]</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1h8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1h8k OCA], [http://pdbe.org/1h8k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1h8k RCSB], [http://www.ebi.ac.uk/pdbsum/1h8k PDBsum]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1h8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1h8k OCA], [http://pdbe.org/1h8k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1h8k RCSB], [http://www.ebi.ac.uk/pdbsum/1h8k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1h8k ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
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<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1h8k ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Serrano, L]] | [[Category: Serrano, L]] | ||
[[Category: Vega, M C]] | [[Category: Vega, M C]] | ||
Revision as of 07:33, 21 September 2017
A-SPECTRIN SH3 DOMAIN A11V, V23L, M25V, V53I, V58L MUTANTA-SPECTRIN SH3 DOMAIN A11V, V23L, M25V, V53I, V58L MUTANT
Structural highlights
Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. Publication Abstract from PubMedWe have designed de novo 13 divergent spectrin SH3 core sequences to determine their folding properties. Kinetic analysis of the variants with stability similar to that of the wild type protein shows accelerated unfolding and refolding rates compatible with a preferential stabilization of the transition state. This is most likely caused by conformational strain in the native state, as deletion of a methyl group (Ile-->Val) leads to deceleration in unfolding and increased stability (up to 2 kcal x mol(-1)). Several of these Ile-->Val mutants have negative phi(-U) values, indicating that some noncanonical phi(-U) values might result from conformational strain. Thus, producing a stable protein does not necessarily mean that the design process has been entirely successful. Strained interactions could have been introduced, and a reduction in the buried volume could result in a large increase in stability and a reduction in unfolding rates. Conformational strain in the hydrophobic core and its implications for protein folding and design.,Ventura S, Vega MC, Lacroix E, Angrand I, Spagnolo L, Serrano L Nat Struct Biol. 2002 Jun;9(6):485-93. PMID:12006985[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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