5cck: Difference between revisions

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-'''Unreleased structure'''
+==Crystal structure of Human anti-HIV-1 broadly neutralizing antibody 3BC315 Fab==
+<StructureSection load='5cck' size='340' side='right' caption='[[5cck]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[5cck]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CCK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CCK FirstGlance]. <br>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CXS:3-CYCLOHEXYL-1-PROPYLSULFONIC+ACID'>CXS</scene></td></tr>
+<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5awn|5awn]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cck FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cck OCA], [http://pdbe.org/5cck PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cck RCSB], [http://www.ebi.ac.uk/pdbsum/5cck PDBsum]</span></td></tr>
+</table>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The recent identification of three broadly neutralizing antibodies (bnAbs) against gp120-gp41 interface epitopes has expanded the targetable surface on the HIV-1 envelope glycoprotein (Env) trimer. By using biochemical, biophysical and computational methods, we map the previously unknown trimer epitopes of two related antibodies, 3BC315 and 3BC176. A cryo-EM reconstruction of a soluble Env trimer bound to 3BC315 Fab at 9.3 A resolution reveals that the antibody binds between two gp41 protomers, and neutralizes the virus by accelerating trimer decay. In contrast, bnAb 35O22 binding to a partially overlapping quaternary epitope at the gp120-gp41 interface does not induce decay. A conserved gp41-proximal glycan at N88 was also shown to play a role in the binding kinetics of 3BC176 and 3BC315. Finally, our data suggest that the dynamic structure of the Env trimer influences exposure of bnAb epitopes.
-The entry 5cck is ON HOLD  until Paper Publication
+Antibodies to a conformational epitope on gp41 neutralize HIV-1 by destabilizing the Env spike.,Lee JH, Leaman DP, Kim AS, Torrents de la Pena A, Sliepen K, Yasmeen A, Derking R, Ramos A, de Taeye SW, Ozorowski G, Klein F, Burton DR, Nussenzweig MC, Poignard P, Moore JP, Klasse PJ, Sanders RW, Zwick MB, Wilson IA, Ward AB Nat Commun. 2015 Sep 25;6:8167. doi: 10.1038/ncomms9167. PMID:26404402<ref>PMID:26404402</ref>
-Authors: Lee, J.H., Ward, A.B., Wilson, I.A.
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
-Description: Crystal structure of Human anti-HIV-1 broadly neutralizing antibody 3BC315 Fab
+<div class="pdbe-citations 5cck" style="background-color:#fffaf0;"></div>
-[[Category: Unreleased Structures]]
+== References ==
-[[Category: Ward, A.B]]
+<references/>
-[[Category: Lee, J.H]]
+__TOC__
-[[Category: Wilson, I.A]]
+</StructureSection>
+[[Category: Lee, J H]]
+[[Category: Ward, A B]]
+[[Category: Wilson, I A]]
+[[Category: Antibody]]
+[[Category: Bnab]]
+[[Category: Env]]
+[[Category: Hiv-1]]
+[[Category: Immune system]]