2fsh: Difference between revisions
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|PDB= 2fsh |SIZE=350|CAPTION= <scene name='initialview01'>2fsh</scene>, resolution 2.000Å | |PDB= 2fsh |SIZE=350|CAPTION= <scene name='initialview01'>2fsh</scene>, resolution 2.000Å | ||
|SITE= | |SITE= | ||
|LIGAND= <scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER'>ANP</scene> | |LIGAND= <scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene> | ||
|ACTIVITY= | |ACTIVITY= | ||
|GENE= secA, azi, pea, prlD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]) | |GENE= secA, azi, pea, prlD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]) | ||
|DOMAIN= | |||
|RELATEDENTRY=[[2fsf|2FSF]], [[2fsg|2FSG]], [[2fsi|2FSI]] | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fsh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fsh OCA], [http://www.ebi.ac.uk/pdbsum/2fsh PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2fsh RCSB]</span> | |||
}} | }} | ||
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[[Category: Papanikolau, Y.]] | [[Category: Papanikolau, Y.]] | ||
[[Category: Petratos, K.]] | [[Category: Petratos, K.]] | ||
[[Category: atpase]] | [[Category: atpase]] | ||
[[Category: dna-rna helicase]] | [[Category: dna-rna helicase]] | ||
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[[Category: seca]] | [[Category: seca]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:07:09 2008'' | ||
Revision as of 03:07, 31 March 2008
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| , resolution 2.000Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Gene: | secA, azi, pea, prlD (Escherichia coli) | ||||||
| Related: | 2FSF, 2FSG, 2FSI
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Complex SecA:AMP-PNP from Escherichia coli
OverviewOverview
SecA is the preprotein translocase ATPase subunit and a superfamily 2 (SF2) RNA helicase. Here we present the 2 A crystal structures of the Escherichia coli SecA homodimer in the apo form and in complex with ATP, ADP and adenosine 5'-[beta,gamma-imido]triphosphate (AMP-PNP). Each monomer contains the SF2 ATPase core (DEAD motor) built of two domains (nucleotide binding domain, NBD and intramolecular regulator of ATPase 2, IRA2), the preprotein binding domain (PBD), which is inserted in NBD and a carboxy-terminal domain (C-domain) linked to IRA2. The structures of the nucleotide complexes of SecA identify an interfacial nucleotide-binding cleft located between the two DEAD motor domains and residues critical for ATP catalysis. The dimer comprises two virtually identical protomers associating in an antiparallel fashion. Dimerization is mediated solely through extensive contacts of the DEAD motor domains leaving the C-domain facing outwards from the dimerization core. This dimerization mode explains the effect of functionally important mutations and is completely different from the dimerization models proposed for other SecA structures. The repercussion of these findings on translocase assembly and catalysis is discussed.
About this StructureAbout this Structure
2FSH is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.
ReferenceReference
Structure of dimeric SecA, the Escherichia coli preprotein translocase motor., Papanikolau Y, Papadovasilaki M, Ravelli RB, McCarthy AA, Cusack S, Economou A, Petratos K, J Mol Biol. 2007 Mar 9;366(5):1545-57. Epub 2006 Dec 23. PMID:17229438
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