1rm9: Difference between revisions
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|PDB= 1rm9 |SIZE=350|CAPTION= <scene name='initialview01'>1rm9</scene>, resolution 2.90Å | |PDB= 1rm9 |SIZE=350|CAPTION= <scene name='initialview01'>1rm9</scene>, resolution 2.90Å | ||
|SITE= | |SITE= | ||
|LIGAND= | |LIGAND= <scene name='pdbligand=4F3:[2-(1-AMINO-2-HYDROXY-PROPYL)-4-(4-FLUORO-1H-INDOL-3-YLMETHYL)-5-HYDROXY-IMIDAZOL-1-YL]-ACETIC+ACID'>4F3</scene>, <scene name='pdbligand=4FW:4-FLUOROTRYPTOPHANE'>4FW</scene> | ||
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
|DOMAIN= | |||
|RELATEDENTRY=[[1oxd|1OXD]] | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rm9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rm9 OCA], [http://www.ebi.ac.uk/pdbsum/1rm9 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1rm9 RCSB]</span> | |||
}} | }} | ||
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[[Category: Steiner, T.]] | [[Category: Steiner, T.]] | ||
[[Category: Wenger, W.]] | [[Category: Wenger, W.]] | ||
[[Category: beta-barrel | [[Category: beta-barrel]] | ||
[[Category: gfp]] | |||
[[Category: noncanonical amino acid]] | |||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:30:11 2008'' | ||
Revision as of 23:30, 30 March 2008
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| , resolution 2.90Å | |||||||
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| Ligands: | , | ||||||
| Related: | 1OXD
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Probing the Role of Tryptophans in Aequorea Victoria Green Fluorescent Proteins with an Expanded Genetic Code
OverviewOverview
The expanded genetic code in combination with site-directed mutagenesis was used to probe spectroscopic and structural roles of tryptophan (Trp) residues in Aequorea victoria green fluorescent proteins (avGFPs). Nine different halogen-, chalcogen-, and methyl-containing Trp isosteric analogues and surrogates were incorporated into avGFPs containing indole moieties in, and outside of, the chromophore, by the use of the selective pressure incorporation method. Such isosteric replacements introduced minimal local geometry changes in indole moieties, often to the level of single atomic exchange ('atomic mutation') and do not affect three-dimensional structures of avGFPs but induce changes in spectral properties. Our approach offers a new platform to re-evaluate issues like resonance transfer, mechanisms of chromophore formation and maturation, as well as the importance of local geometry and weak sulphur-aromatic interactions for avGFP spectral properties and structural stability. The library of novel tailor-made avGFP mutants and variants generated in this work has demonstrated not only the potentials of the expanded genetic code to study spectroscopic functions, but also a new approach to generate tailor-made proteins with interesting and useful spectral properties.
About this StructureAbout this Structure
1RM9 is a Single protein structure of sequence from Aequorea victoria. Full crystallographic information is available from OCA.
ReferenceReference
Probing the role of tryptophans in Aequorea victoria green fluorescent proteins with an expanded genetic code., Budisa N, Pal PP, Alefelder S, Birle P, Krywcun T, Rubini M, Wenger W, Bae JH, Steiner T, Biol Chem. 2004 Feb;385(2):191-202. PMID:15101562
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