3zrd: Difference between revisions
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==Oxidised Thiol peroxidase (Tpx) from Yersinia pseudotuberculosis== | ==Oxidised Thiol peroxidase (Tpx) from Yersinia pseudotuberculosis== | ||
<StructureSection load='3zrd' size='340' side='right' caption='[[3zrd]], [[Resolution|resolution]] 1.74Å' scene=''> | <StructureSection load='3zrd' size='340' side='right' caption='[[3zrd]], [[Resolution|resolution]] 1.74Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3zrd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[3zrd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Yerpy Yerpy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZRD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZRD FirstGlance]. <br> | ||
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3zre|3zre]], [[2yjh|2yjh]]</td></tr> | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3zre|3zre]], [[2yjh|2yjh]]</td></tr> | ||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peroxiredoxin Peroxiredoxin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.15 1.11.1.15] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peroxiredoxin Peroxiredoxin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.15 1.11.1.15] </span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zrd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zrd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zrd RCSB], [http://www.ebi.ac.uk/pdbsum/3zrd PDBsum]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zrd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zrd OCA], [http://pdbe.org/3zrd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3zrd RCSB], [http://www.ebi.ac.uk/pdbsum/3zrd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3zrd ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | |||
[[http://www.uniprot.org/uniprot/Q66A71_YERPS Q66A71_YERPS]] Has antioxidant activity. Could remove peroxides or H(2)O(2) (By similarity).[HAMAP-Rule:MF_00269] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
<div class="pdbe-citations 3zrd" style="background-color:#fffaf0;"></div> | |||
==See Also== | ==See Also== | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Peroxiredoxin]] | [[Category: Peroxiredoxin]] | ||
[[Category: | [[Category: Yerpy]] | ||
[[Category: Elofsson, M]] | [[Category: Elofsson, M]] | ||
[[Category: Gabrielsen, M]] | [[Category: Gabrielsen, M]] | ||
Revision as of 01:20, 6 August 2016
Oxidised Thiol peroxidase (Tpx) from Yersinia pseudotuberculosisOxidised Thiol peroxidase (Tpx) from Yersinia pseudotuberculosis
Structural highlights
Function[Q66A71_YERPS] Has antioxidant activity. Could remove peroxides or H(2)O(2) (By similarity).[HAMAP-Rule:MF_00269] Publication Abstract from PubMedThiol peroxidase, Tpx, has been shown to be a target protein of the salicylidene acylhydrazide class of antivirulence compounds. In this study we present the crystal structures of Tpx from Y. pseudotuberculosis (ypTpx) in the oxidised and reduced states, together with the structure of the C61S mutant. The structures solved are consistent with previously solved atypical 2-Cys thiol peroxidases, including that for "forced" reduced states using the C61S mutant. In addition, by investigating the solution structure of ypTpx using small angle X-ray scattering (SAXS), we have confirmed that reduced state ypTpx in solution is a homodimer. The solution structure also reveals flexibility around the dimer interface. Notably, the conformational changes observed between the redox states at the catalytic triad and at the dimer interface have implications for substrate and inhibitor binding. The structural data were used to model the binding of two salicylidene acylhydrazide compounds to the oxidised structure of ypTpx. Overall, the study provides insights into the binding of the salicylidene acylhydrazides to ypTpx, aiding our long-term strategy to understand the mode of action of this class of compounds. Structural Characterisation of Tpx from Yersinia pseudotuberculosis Reveals Insights into the Binding of Salicylidene Acylhydrazide Compounds.,Gabrielsen M, Beckham KS, Feher VA, Zetterstrom CE, Wang D, Muller S, Elofsson M, Amaro RE, Byron O, Roe AJ PLoS One. 2012;7(2):e32217. Epub 2012 Feb 27. PMID:22384182[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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