Aminoacyl tRNA Synthetase: Difference between revisions

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Michal Harel (talk | contribs)
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*'''Class I aaRS'''
*'''Class I aaRS'''


*Arg-RS
*'''Arg-RS'''


**[[1bs2]] – yArgRS<br />
**[[1bs2]] – yArgRS<br />
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**[[2zue]] – PhArgRS  + Arg-tRNA + ATP analog
**[[2zue]] – PhArgRS  + Arg-tRNA + ATP analog


*Cys-RS
*'''Cys-RS'''


**[[1li5]] - EcCysRS - ''Escherichia coli''<br />
**[[1li5]] - EcCysRS - ''Escherichia coli''<br />
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**[[1u0b]] – EcCysRS + Cys-tRNA  
**[[1u0b]] – EcCysRS + Cys-tRNA  


*Gln-RS
*'''Gln-RS'''


**[[1nyl]]– EcGlnRS<br />
**[[1nyl]]– EcGlnRS<br />
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**[[1exd]] - EcGlnRS + Gln-tRNA (mutant) + AMP
**[[1exd]] - EcGlnRS + Gln-tRNA (mutant) + AMP


*Glu-RS
*'''Glu-RS'''


**[[1gln]] – TtGluRS<br />
**[[1gln]] – TtGluRS<br />
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**[[2hrk]], [[ 2hsm]] - yGluRS N-terminal + GU4 nucleic-binding protein 1
**[[2hrk]], [[ 2hsm]] - yGluRS N-terminal + GU4 nucleic-binding protein 1


*Ile-RS
*'''Ile-RS'''


**[[1ile]] - TtIleRS<br />
**[[1ile]] - TtIleRS<br />
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**[[1ffy]], [[ 1qu2]], [[ 1qu3]] - SaIleRS + Ile-tRNA + antibiotic - ''Staphylococcus aureus''
**[[1ffy]], [[ 1qu2]], [[ 1qu3]] - SaIleRS + Ile-tRNA + antibiotic - ''Staphylococcus aureus''


*Leu-RS
*'''Leu-RS'''


**[[3o0a]] – AaLeuRS hydrolytic domain – ''Aquifex aeolicus''<br />[[2wfd]] – hLeuRS editing domain – human<br />
**[[3o0a]] – AaLeuRS hydrolytic domain – ''Aquifex aeolicus''<br />[[2wfd]] – hLeuRS editing domain – human<br />
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**[[2bte]], [[ 2byt]] - TtLeuRS + Leu-tRNA + Leu
**[[2bte]], [[ 2byt]] - TtLeuRS + Leu-tRNA + Leu


*Lys-RS
*'''Lys-RS'''


**[[1irx]] – PhLysRS<br />
**[[1irx]] – PhLysRS<br />
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**[[1e24]] - EcLysRS + Lys + ATP
**[[1e24]] - EcLysRS + Lys + ATP


*''Leu-RS + tRNA''<br />
*''Lys-RS + tRNA''<br />


**[[2zni]], [[2znj]] – DhLysRS + tRNA
**[[2zni]], [[2znj]] – DhLysRS + tRNA


*Met-RS
*'''Met-RS'''


**[[1a8h]] – TtMetRS<br />
**[[1a8h]] – TtMetRS<br />
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**[[2hsn]] - yMetRS N-terminal + GU4 nucleic-binding protein 1 N-terminal
**[[2hsn]] - yMetRS N-terminal + GU4 nucleic-binding protein 1 N-terminal


*Trp-RS
*'''Trp-RS'''


**[[1d2r]] - GsTrpRS<br />
**[[1d2r]] - GsTrpRS<br />
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**[[2ake]], [[2dr2]] - hTrpRS + Trp-tRNA  
**[[2ake]], [[2dr2]] - hTrpRS + Trp-tRNA  


*Tyr-RS
*'''Tyr-RS'''


**[[1tya]], [[ 1tyb]], [[ 1tyc]], [[ 1tyd]], [[ 2ts1]] – GsTyrRS<br />
**[[1tya]], [[ 1tyb]], [[ 1tyc]], [[ 1tyd]], [[ 2ts1]] – GsTyrRS<br />
Line 303: Line 303:
**[[2rkj]] – NcTyrRS + RNA  
**[[2rkj]] – NcTyrRS + RNA  


*Val-RS
*'''Val-RS'''


**[[1iyw]] - TtValRS<br />
**[[1iyw]] - TtValRS<br />
Line 315: Line 315:
*'''Class II aaRS'''
*'''Class II aaRS'''


*Ala-RS
*'''Ala-RS'''


**[[3g98]] – AaAlaRS residues 758-867<br />
**[[3g98]] – AaAlaRS residues 758-867<br />
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**[[2ztg]] – AfAlaRS + Ala-SA<br />  
**[[2ztg]] – AfAlaRS + Ala-SA<br />  


*Asp-RS
*'''Asp-RS'''


**[[3nen]], [[1b8a]] – TkAspRS - ''Thermococcus kodakarensis''<br />  
**[[3nen]], [[1b8a]] – TkAspRS - ''Thermococcus kodakarensis''<br />  
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**[[1wyd]] – AspRS – ''Sulfolobus tokodaii''<br />
**[[1wyd]] – AspRS – ''Sulfolobus tokodaii''<br />
**[[1eov]] - yAspRS<br />
**[[1eov]] - yAspRS<br />
[[1n9w]], [[1l0w]], [[1g51]] – TtAspRS<br />
**[[1n9w]], [[1l0w]], [[1g51]] – TtAspRS<br />
**[[1eqr]] – EcAspRS
**[[1eqr]] – EcAspRS


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**[[1il2]], [[1c0a]] – EcAspRS + Asp-tRNA + Asp-adenylate
**[[1il2]], [[1c0a]] – EcAspRS + Asp-tRNA + Asp-adenylate


*Asn-RS
*'''Asn-RS'''


**[[1x56]] - PhAsnRS <br />
**[[1x56]] - PhAsnRS <br />
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**[[12as]] - EcAsnRS + Asn + AMP
**[[12as]] - EcAsnRS + Asn + AMP


*Gly-RS
*'''Gly-RS'''


**[[1ati]] – TtGlyRS<br />
**[[1ati]] – TtGlyRS<br />
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**[[1ggm]] – TtGlyRS + Gly-adenylate
**[[1ggm]] – TtGlyRS + Gly-adenylate


*His-RS
*'''His-RS'''


**[[3net]] – HisRS – Nostoc<br />
**[[3net]] – HisRS – Nostoc<br />
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**[[1kmn]] - EcHisRS + His-ol + ATP  
**[[1kmn]] - EcHisRS + His-ol + ATP  


*Phe-RS
*'''Phe-RS'''


**[[1pys]] – TtPheRS<br />
**[[1pys]] – TtPheRS<br />
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**[[2iy5]] - TtPheRS α+β chains + Phe-ol + Phe-tRNA
**[[2iy5]] - TtPheRS α+β chains + Phe-ol + Phe-tRNA


*Pro-RS
*'''Pro-RS'''


**[[1hc7]] – TtProRS<br />
**[[1hc7]] – TtProRS<br />
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**[[1h4s]] - TtProRS + Pro-tRNA + Pro-SA<br />
**[[1h4s]] - TtProRS + Pro-tRNA + Pro-SA<br />


*Ser-RS
*'''Ser-RS'''


**[[3lsq]] – TbSerRS<br />  
**[[3lsq]] – TbSerRS<br />  
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**[[2du5]], [[2du6]] - AfSerRS (mutant) + Cys-tRNA + phosphoserine
**[[2du5]], [[2du6]] - AfSerRS (mutant) + Cys-tRNA + phosphoserine


*Thr-RS
*'''Thr-RS'''


**[[1y2q]] - PaThrRS editing domain<br />
**[[1y2q]] - PaThrRS editing domain<br />

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman, Ann Taylor