2xuc: Difference between revisions

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[[Category: Aspergillus fumigatus]]
[[Category: Aspergillus fumigatus]]
[[Category: Chitinase]]
[[Category: Chitinase]]
[[Category: Blair, D E.]]
[[Category: Blair, D E]]
[[Category: Desvergnes, S.]]
[[Category: Desvergnes, S]]
[[Category: Eggleston, I M.]]
[[Category: Eggleston, I M]]
[[Category: Hurtadoguerrero, R.]]
[[Category: Hurtadoguerrero, R]]
[[Category: Ibrahim, A F.M.]]
[[Category: Ibrahim, A F.M]]
[[Category: Rush, C L.]]
[[Category: Rush, C L]]
[[Category: Schuttelkopf, A W.]]
[[Category: Schuttelkopf, A W]]
[[Category: Vanaalten, D M.F.]]
[[Category: Vanaalten, D M.F]]
[[Category: Aspergillosis]]
[[Category: Aspergillosis]]
[[Category: Hydrolase]]
[[Category: Hydrolase]]

Revision as of 11:02, 25 January 2015

NATURAL PRODUCT-GUIDED DISCOVERY OF A FUNGAL CHITINASE INHIBITORNATURAL PRODUCT-GUIDED DISCOVERY OF A FUNGAL CHITINASE INHIBITOR

Structural highlights

2xuc is a 3 chain structure with sequence from Aspergillus fumigatus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, ,
Activity:Chitinase, with EC number 3.2.1.14
Resources:FirstGlance, OCA, RCSB, PDBsum

Publication Abstract from PubMed

Natural products are often large, synthetically intractable molecules, yet frequently offer surprising inroads into previously unexplored chemical space for enzyme inhibitors. Argifin is a cyclic pentapeptide that was originally isolated as a fungal natural product. It competitively inhibits family 18 chitinases by mimicking the chitooligosaccharide substrate of these enzymes. Interestingly, argifin is a nanomolar inhibitor of the bacterial-type subfamily of fungal chitinases that possess an extensive chitin-binding groove, but does not inhibit the much smaller, plant-type enzymes from the same family that are involved in fungal cell division and are thought to be potential drug targets. Here we show that a small, highly efficient, argifin-derived, nine-atom fragment is a micromolar inhibitor of the plant-type chitinase ChiA1 from the opportunistic pathogen Aspergillus fumigatus. Evaluation of the binding mode with the first crystal structure of an A. fumigatus plant-type chitinase reveals that the compound binds the catalytic machinery in the same manner as observed for argifin with the bacterial-type chitinases. The structure of the complex was used to guide synthesis of derivatives to explore a pocket near the catalytic machinery. This work provides synthetically tractable plant-type family 18 chitinase inhibitors from the repurposing of a natural product.

Natural product-guided discovery of a fungal chitinase inhibitor.,Rush CL, Schuttelkopf AW, Hurtado-Guerrero R, Blair DE, Ibrahim AF, Desvergnes S, Eggleston IM, van Aalten DM Chem Biol. 2010 Dec 22;17(12):1275-81. PMID:21168763[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Rush CL, Schuttelkopf AW, Hurtado-Guerrero R, Blair DE, Ibrahim AF, Desvergnes S, Eggleston IM, van Aalten DM. Natural product-guided discovery of a fungal chitinase inhibitor. Chem Biol. 2010 Dec 22;17(12):1275-81. PMID:21168763 doi:10.1016/j.chembiol.2010.07.018

2xuc, resolution 2.30Å

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