1c4f: Difference between revisions
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|PDB= 1c4f |SIZE=350|CAPTION= <scene name='initialview01'>1c4f</scene>, resolution 2.25Å | |PDB= 1c4f |SIZE=350|CAPTION= <scene name='initialview01'>1c4f</scene>, resolution 2.25Å | ||
|SITE= | |SITE= | ||
|LIGAND= | |LIGAND= <scene name='pdbligand=CRO:[2-(1-AMINO-2-HYDROXY-PROPYL)-4-(4-HYDROXY-BENZYLIDINE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETALDEHYDE'>CRO</scene> | ||
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
|DOMAIN= | |||
|RELATEDENTRY= | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1c4f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c4f OCA], [http://www.ebi.ac.uk/pdbsum/1c4f PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1c4f RCSB]</span> | |||
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[[Category: photoactive protein]] | [[Category: photoactive protein]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 19:14:21 2008'' | ||
Revision as of 19:14, 30 March 2008
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
GREEN FLUORESCENT PROTEIN S65T AT PH 4.6
OverviewOverview
The green fluorescent protein (GFP) from the jellyfish Aequorea victoria has become a useful tool in molecular and cell biology. Recently, it has been found that the fluorescence spectra of most mutants of GFP respond rapidly and reversibly to pH variations, making them useful as probes of intracellular pH. To explore the structural basis for the titration behavior of the popular GFP S65T variant, we determined high-resolution crystal structures at pH 8.0 and 4.6. The structures revealed changes in the hydrogen bond pattern with the chromophore, suggesting that the pH sensitivity derives from protonation of the chromophore phenolate. Mutations were designed in yellow fluorescent protein (S65G/V68L/S72A/T203Y) to change the solvent accessibility (H148G) and to modify polar groups (H148Q, E222Q) near the chromophore. pH titrations of these variants indicate that the chromophore pKa can be modulated over a broad range from 6 to 8, allowing for pH determination from pH 5 to pH 9. Finally, mutagenesis was used to raise the pKa from 6.0 (S65T) to 7.8 (S65T/H148D). Unlike other variants, S65T/H148D exhibits two pH-dependent excitation peaks for green fluorescence with a clean isosbestic point. This raises the interesting possibility of using fluorescence at this isosbestic point as an internal reference. Practical real time in vivo applications in cell and developmental biology are proposed.
About this StructureAbout this Structure
1C4F is a Single protein structure of sequence from Aequorea victoria. Full crystallographic information is available from OCA.
ReferenceReference
Structural and spectral response of green fluorescent protein variants to changes in pH., Elsliger MA, Wachter RM, Hanson GT, Kallio K, Remington SJ, Biochemistry. 1999 Apr 27;38(17):5296-301. PMID:10220315
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