4nyk: Difference between revisions

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-{{STRUCTURE_4nyk|  PDB=4nyk  |  SCENE=  }}
+==Structure of a membrane protein==
-===Structure of a membrane protein===
+<StructureSection load='4nyk' size='340' side='right' caption='[[4nyk]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
-{{ABSTRACT_PUBMED_19641589}}
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4nyk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chick Chick]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3hgc 3hgc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NYK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NYK FirstGlance]. <br>
-==Function==
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
+<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3hgc|3hgc]], [[2qts|2qts]], [[4ntw|4ntw]], [[4ntx|4ntx]], [[4nty|4nty]], [[4fz0|4fz0]]</td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ASIC1, ACCN2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9031 CHICK])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4nyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nyk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4nyk RCSB], [http://www.ebi.ac.uk/pdbsum/4nyk PDBsum]</span></td></tr>
+</table>
+== Function ==
 [[http://www.uniprot.org/uniprot/ASIC1_CHICK ASIC1_CHICK]] Cation channel with high affinity for sodium, which is gated by extracellular protons and inhibited by the diuretic amiloride (By similarity).<ref>PMID:16002453</ref>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Acid-sensing ion channels are proton-activated, sodium-selective channels composed of three subunits, and are members of the superfamily of epithelial sodium channels, mechanosensitive and FMRF-amide peptide-gated ion channels. These ubiquitous eukaryotic ion channels have essential roles in biological activities as diverse as sodium homeostasis, taste and pain. Despite their crucial roles in biology and their unusual trimeric subunit stoichiometry, there is little knowledge of the structural and chemical principles underlying their ion channel architecture and ion-binding sites. Here we present the structure of a functional acid-sensing ion channel in a desensitized state at 3 A resolution, the location and composition of the approximately 8 A 'thick' desensitization gate, and the trigonal antiprism coordination of caesium ions bound in the extracellular vestibule. Comparison of the acid-sensing ion channel structure with the ATP-gated P2X(4) receptor reveals similarity in pore architecture and aqueous vestibules, suggesting that there are unanticipated yet common structural and mechanistic principles.
-==About this Structure==
+Pore architecture and ion sites in acid-sensing ion channels and P2X receptors.,Gonzales EB, Kawate T, Gouaux E Nature. 2009 Jul 30;460(7255):599-604. PMID:19641589<ref>PMID:19641589</ref>
-[[4nyk]] is a 1 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3hgc 3hgc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NYK OCA].
-==Reference==
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-<ref group="xtra">PMID:019641589</ref><references group="xtra"/><references/>
+</div>
-[[Category: Baconguis, I.]]
+== References ==
-[[Category: Bohlen, C J.]]
+<references/>
-[[Category: Goehring, A.]]
+__TOC__
-[[Category: Gouaux, E.]]
+</StructureSection>
-[[Category: Julius, D.]]
+[[Category: Chick]]
+[[Category: Baconguis, I]]
+[[Category: Bohlen, C J]]
+[[Category: Goehring, A]]
+[[Category: Gouaux, E]]
+[[Category: Julius, D]]
 [[Category: Ion channel]]
 [[Category: Transport protein]]