User:Alice Harmon/Sandbox 5: Difference between revisions
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The core ABA signaling pathway is shown in the figure to the left. In unstimulated cells, the ABA receptor (R) is an unliganded dimer<ref>PMID:19933100</ref><ref>PMID:23265948</ref> (monomer shown) in the cytosol and nucleus , and the SNRK2 protein kinase (K) is bound to a protein phosphatase 2C (P) in a complex (K-P) in which the kinase is dephosphorylated and inactivated by the phosphatase. When the ABA level rises ABA binds to the ABA receptor<ref>PMID:19893533</ref><ref>PMID:19407143</ref><ref>PMID:19407142</ref>. The activated receptor (R<sup>.</sup>ABA) binds to a protein phosphatase 2C<ref>PMID:19624469</ref> (R<sup>.</sup>ABA-P), and frees the protein kinase to be activated by autophosphorylation or phosphorylation by another protein kinase. Activation of SnRK2.6/OST1/SRK2E leads to phosphorylation of: 1) ion channels SLAC1<ref>PMID: 19955405</ref> and KAT1<ref>PMID:19785574</ref> in guard cells and stomatal closure; 2) transcription factor ABI5<ref name = "Nakashima2009"/> in seeds/seedlings and dormancy/growth arrest; or 3) phosphorylation of transcription factor AREB/ABF <ref>PMID: 16446457</ref><ref name = "Fujii2007"/> in vegetative tissue and stress tolerance and growth regulation. | The core ABA signaling pathway is shown in the figure to the left. In unstimulated cells, the ABA receptor (R) is an unliganded dimer<ref>PMID:19933100</ref><ref>PMID:23265948</ref> (monomer shown) in the cytosol and nucleus , and the SNRK2 protein kinase (K) is bound to a protein phosphatase 2C (P) in a complex (K-P) in which the kinase is dephosphorylated and inactivated by the phosphatase. When the ABA level rises ABA binds to the ABA receptor<ref>PMID:19893533</ref><ref>PMID:19407143</ref><ref>PMID:19407142</ref>. The activated receptor (R<sup>.</sup>ABA) binds to a protein phosphatase 2C<ref>PMID:19624469</ref> (R<sup>.</sup>ABA-P), and frees the protein kinase to be activated by autophosphorylation or phosphorylation by another protein kinase. Activation of SnRK2.6/OST1/SRK2E leads to phosphorylation of: 1) ion channels SLAC1<ref>PMID: 19955405</ref> and KAT1<ref>PMID:19785574</ref> in guard cells and stomatal closure; 2) transcription factor ABI5<ref name = "Nakashima2009"/> in seeds/seedlings and dormancy/growth arrest; or 3) phosphorylation of transcription factor AREB/ABF <ref>PMID: 16446457</ref><ref name = "Fujii2007"/> in vegetative tissue and stress tolerance and growth regulation. | ||
Structures in the figure are: R, apo | Structures in the figure are: R, apo PYL2, [[3kdh]]; R<sup>.</sup>ABA, PYL2<sup>.</sup>ABA, [[3kdi]]; K-P; SnRK2.6-HAB1, [[3ujg]]; R<sup>.</sup>ABA-P, PYL2<sup>.</sup>ABA-ABI2, [[3ujl]]; K, SnRK2.6,[[3uc4]]. | ||
==Pyr/Pyl/RCAR family of ABA receptors== | ==Pyr/Pyl/RCAR family of ABA receptors== | ||
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PYR1/RCAR11 and PYL9/RCAR1 | PYR1/RCAR11 and PYL9/RCAR1 | ||
PYR1, PYL1, PYL2, and PYL3 show ABA-dependent inhibition of PP2Cs such as ABI1, HYPERSENSITIVE TO ABA 1 (HAB1), HAB2, and ABA-HYPERSENSITIVE GERMINATION 3 (AHG3, also named PP2CA)<ref>PMID:23265948</ref> | PYR1, PYL1, PYL2, and PYL3 show ABA-dependent inhibition of PP2Cs such as ABI1, HYPERSENSITIVE TO ABA 1 (HAB1), HAB2, and ABA-HYPERSENSITIVE GERMINATION 3 (AHG3, also named PP2CA)<ref>PMID:23265948</ref> | ||
"Upon binding to ABA or pyrabactin, the gate | |||
(Melcher et al., 2009) of PYL undergoes a pronounced conformational | |||
change, and the PYL protomers in the cis-homodimer | |||
separate slightly, decreasing the area of interface and creating | |||
a binding surface for protein phosphatase 2C (PP2C)." "Upon ligand binding, the apo-PYL3 cis-homodimer is | |||
converted to a trans-homodimer, in which two ligand-bound | |||
PYLs bind to each other in a reverse direction"<ref>"PMID:22579247</ref> | |||
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|- | |- | ||
|<applet load='3k3k' size='300' frame='true' align='left' caption='3k3k - PYR1 dimer' scene = '56/564059/Pyr1dimer/2'/><br clear='both'>'''3k3k scene'''<Br><scene name='56/564059/Pyr1dimer/2'>3. PYR1 dimer</scene> in which one monomer is bound to ABA. The native form of the receptor is a dimer<ref>PMID:19933100</ref><ref>PMID:23265948</ref>. | |<applet load='3k3k' size='300' frame='true' align='left' caption='3k3k - PYR1 dimer' scene = '56/564059/Pyr1dimer/2'/><br clear='both'>'''3k3k scene'''<Br><scene name='56/564059/Pyr1dimer/2'>3. PYR1 dimer</scene> in which one monomer is bound to ABA. The native form of the receptor is a dimer<ref>PMID:19933100</ref><ref>PMID:23265948</ref>. | ||
|<applet load='3klx' size='300' frame='true' align='left' caption='3klx - PYL3 ''cis'' dimer' scene = '56/564059/Apopyl3cisdimer/1'/><br clear='both'>'''3klx scene'''<Br><scene name='56/564059/Apopyl3cisdimer/1'>Apo PYL3 ''cis'' dimer </scene> | |||
|<applet load='4dsc' size='300' frame='true' align='left' caption='4dsc - PYL3.ABA ''trans'' dimer' scene = '56/564059/Pylabatransdimer/1'/><br clear='both'>'''4dsc scene'''<Br><scene name='56/564059/Pylabatransdimer/1'>PYL3.ABA ''trans'' dimer'</scene> | |||
|} | |} | ||
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[[3kay]], apo AtPYL1 <br> | [[3kay]], apo AtPYL1 <br> | ||
[[3kdh]], [[3kaz]], [[3kl1]] apo AtPYL2<br> | [[3kdh]], [[3kaz]], [[3kl1]] apo AtPYL2<br> | ||
[[3klx]], | [[3klx]], Apo AtPYL3<br> | ||
[[4jdl]], Apo AtPYL5<br> | [[4jdl]], Apo AtPYL5<br> | ||
[[3rt2]], [[3uqh]] apo AtPYL10<br> | [[3rt2]], [[3uqh]] apo AtPYL10<br> |