2mhr: Difference between revisions
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[[Image:2mhr.gif|left|200px]] | [[Image:2mhr.gif|left|200px]] | ||
'''STRUCTURE OF MYOHEMERYTHRIN IN THE AZIDOMET STATE AT 1.7(SLASH)1.3 ANGSTROMS RESOLUTION''' | {{Structure | ||
|PDB= 2mhr |SIZE=350|CAPTION= <scene name='initialview01'>2mhr</scene>, resolution 1.3Å | |||
|SITE= | |||
|LIGAND= <scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> and <scene name='pdbligand=FEO:MU-OXO-DIIRON'>FEO</scene> | |||
|ACTIVITY= | |||
|GENE= | |||
}} | |||
'''STRUCTURE OF MYOHEMERYTHRIN IN THE AZIDOMET STATE AT 1.7(SLASH)1.3 ANGSTROMS RESOLUTION''' | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
2MHR is a [ | 2MHR is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Themiste_zostericola Themiste zostericola]. This structure supersedes the now removed PDB entry 1MHR. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MHR OCA]. | ||
==Reference== | ==Reference== | ||
Structure of myohemerythrin in the azidomet state at 1.7/1.3 A resolution., Sheriff S, Hendrickson WA, Smith JL, J Mol Biol. 1987 Sep 20;197(2):273-96. PMID:[http:// | Structure of myohemerythrin in the azidomet state at 1.7/1.3 A resolution., Sheriff S, Hendrickson WA, Smith JL, J Mol Biol. 1987 Sep 20;197(2):273-96. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/3681996 3681996] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Themiste zostericola]] | [[Category: Themiste zostericola]] | ||
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[[Category: oxygen binding]] | [[Category: oxygen binding]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:47:19 2008'' | ||
Revision as of 18:47, 20 March 2008
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| , resolution 1.3Å | |||||||
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| Ligands: | , and | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
STRUCTURE OF MYOHEMERYTHRIN IN THE AZIDOMET STATE AT 1.7(SLASH)1.3 ANGSTROMS RESOLUTION
OverviewOverview
The molecular model of myohemerythrin, an oxygen-carrying protein from sipunculan worms, has been refined by stereochemically restrained least-squares minimization at 1.7/1.3 A resolution to a conventional R-value of 0.158. The estimated positional standard deviation is better than 0.15 A for most of the 979 protein atoms. The average isotropic displacement parameter, B, for the protein atoms is 23.1 A2. This high average B parameter appears to be due to the overall motion of the molecule, which correlates with the observed anisotropic diffraction. The side-chains of seven residues were modeled in two conformations, i.e. the side-chains were discretely disordered, and B parameters for several lysine and glutamate side-chains indicate that they are poorly localized. Of the residues in myohemerythrin, 66% are helical, with 62% occurring in four long alpha-helices with mean values for the backbone torsion angles of phi = -65 degrees, psi = -42 degrees, and for the hydrogen bonds distances of N ... O, 3.0 A and H ... O, 2.1 A, and angles of N ... O = C, 153 degrees, N-H ... O, 157 degrees, and H ... O = C, 147 degrees. For two-thirds of the alpha-helical residues, the torsional rotation of the C alpha-C beta bond, chi 1, is approximately -60 degrees, and for one-third chi 1 is approximately 180 degrees. Although most turns in myohemerythrin are well-categorized by previous classification, two do not fit in established patterns. Also included in the refined model are three sulfate ions, all partially occupied, and 157 water molecules, 40% of which are modeled fully occupied. Only one water molecule is internal to the protein, the remainder occur on the surface and are observed principally between symmetry-related molecules contributing, along with van der Waals' contacts, most of the interactions between molecules. There are eight intermolecular protein-protein hydrogen bonds, of which only four are between well-located atoms.
About this StructureAbout this Structure
2MHR is a Single protein structure of sequence from Themiste zostericola. This structure supersedes the now removed PDB entry 1MHR. Full crystallographic information is available from OCA.
ReferenceReference
Structure of myohemerythrin in the azidomet state at 1.7/1.3 A resolution., Sheriff S, Hendrickson WA, Smith JL, J Mol Biol. 1987 Sep 20;197(2):273-96. PMID:3681996
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