2fpm: Difference between revisions
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
[[Image:2fpm.jpg|left|200px]] | [[Image:2fpm.jpg|left|200px]] | ||
'''RadA recombinase in complex with AMP-PNP and high concentration of K+''' | {{Structure | ||
|PDB= 2fpm |SIZE=350|CAPTION= <scene name='initialview01'>2fpm</scene>, resolution 2.00Å | |||
|SITE= | |||
|LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene> and <scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER'>ANP</scene> | |||
|ACTIVITY= | |||
|GENE= RADA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2188 Methanococcus voltae]) | |||
}} | |||
'''RadA recombinase in complex with AMP-PNP and high concentration of K+''' | |||
==Overview== | ==Overview== | ||
| Line 7: | Line 16: | ||
==About this Structure== | ==About this Structure== | ||
2FPM is a [ | 2FPM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Methanococcus_voltae Methanococcus voltae]. This structure supersedes the now removed PDB entry 1Z4D. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FPM OCA]. | ||
==Reference== | ==Reference== | ||
Crystal structure of Methanococcus voltae RadA in complex with ADP: hydrolysis-induced conformational change., Qian X, Wu Y, He Y, Luo Y, Biochemistry. 2005 Oct 25;44(42):13753-61. PMID:[http:// | Crystal structure of Methanococcus voltae RadA in complex with ADP: hydrolysis-induced conformational change., Qian X, Wu Y, He Y, Luo Y, Biochemistry. 2005 Oct 25;44(42):13753-61. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16229465 16229465] | ||
[[Category: Methanococcus voltae]] | [[Category: Methanococcus voltae]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
| Line 22: | Line 31: | ||
[[Category: MG]] | [[Category: MG]] | ||
[[Category: atpase]] | [[Category: atpase]] | ||
[[Category: co- | [[Category: co-factor]] | ||
[[Category: potassium-dependence]] | [[Category: potassium-dependence]] | ||
[[Category: protein-atp complex]] | [[Category: protein-atp complex]] | ||
[[Category: rada/adp complex]] | [[Category: rada/adp complex]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:55:21 2008'' | ||
Revision as of 17:55, 20 March 2008
| |||||||
| , resolution 2.00Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , and | ||||||
| Gene: | RADA (Methanococcus voltae) | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
RadA recombinase in complex with AMP-PNP and high concentration of K+
OverviewOverview
Members of a superfamily of RecA-like recombinases facilitate a central strand exchange reaction in the DNA repair process. Archaeal RadA and Rad51 and eukaryal Rad51 and meiosis-specific DMC1 form a closely related group of recombinases distinct from bacterial RecA. Nevertheless, all such recombinases share a conserved core domain which carries the ATPase site and putative DNA-binding sites. Here we present the crystal structure of an archaeal RadA from Methanococcus voltae (MvRadA) in complex with ADP and Mg2+ at 2.1 A resolution. The crystallized RadA-ADP filament has an extended helical pitch similar to those of previously determined structures in the presence of nonhydrolyzable ATP analogue AMP-PNP. Structural comparison reveals two recurrent conformations with an extensive allosteric effect spanning the ATPase site and the putative DNA-binding L2 region. Varied conformations of the L2 region also imply a dynamic nature of recombinase-bound DNA.
About this StructureAbout this Structure
2FPM is a Single protein structure of sequence from Methanococcus voltae. This structure supersedes the now removed PDB entry 1Z4D. Full crystallographic information is available from OCA.
ReferenceReference
Crystal structure of Methanococcus voltae RadA in complex with ADP: hydrolysis-induced conformational change., Qian X, Wu Y, He Y, Luo Y, Biochemistry. 2005 Oct 25;44(42):13753-61. PMID:16229465
Page seeded by OCA on Thu Mar 20 16:55:21 2008