User:Fadel A. Samatey/FlhBc I: Difference between revisions

Line 12:

==Molecular Tour: FlhBc Structures==

This page is under construction. We expect to complete additional interactive molecular scenes before May 5, 2013.

</td></tr></table>

====''Salmonella''====

FlhB from ''Salmonella typhimurium'' consists of 383 amino acids. The cytoplasmic domain 219-383 (length 165, 43% of full length) was crystallized. The resulting model [[3b0z]] includes coordinates for residues 229-353 (length 125, 76% of the crystallized length). The [[asymmetric unit]] contains a single molecule (<scene name='User:Fadel_A._Samatey/Workbench/I3DC-1/Flhb_st/6'>restore initial scene</scene>). As explained in the publication, the position of the long alpha helix appears to be stabilized by

Line 23:

Line 26:

====Comparison====

The FlhBc ''Salmonella'' 3D structure is very similar~~</scene>~~ to that of ''Aquifex''. 102 alpha carbons align with an RMSD of 1.0 Å. Their FlhB's have 32% sequence identity.

The FlhBc ''Salmonella'' 3D structure is very similar to that of ''Aquifex''. 102 alpha carbons align with an RMSD of 1.0 Å. Their FlhB's have 32% sequence identity.

<scene name='User:Fadel_A._Samatey/FlhBc_I/Flhbc_st_plus_aa/2'>Display both structures</scene>, then click the button below to do a structural alignment.

<jmol>

@@ Line 12: / Line 12: @@
 ==Molecular Tour: FlhBc Structures==
 <StructureSection size='450' frame='true' align='right' caption='Cytoplasmic domain of FlhB' scene='User:Fadel_A._Samatey/Workbench/I3DC-1/Flhb_st/6' >
+<table cellpadding="6" style="background-color:#ffff80"><tr><td>
+This page is under construction. We expect to complete additional interactive molecular scenes before May 5, 2013.
+</td></tr></table>
 ====''Salmonella''====
 FlhB from ''Salmonella typhimurium'' consists of 383 amino acids. The cytoplasmic domain 219-383 (length 165, 43% of full length) was crystallized. The resulting model [[3b0z]] includes coordinates for residues 229-353 (length 125, 76% of the crystallized length). The [[asymmetric unit]] contains a single molecule (<scene name='User:Fadel_A._Samatey/Workbench/I3DC-1/Flhb_st/6'>restore initial scene</scene>). As explained in the publication, the position of the long alpha helix appears to be stabilized by
@@ Line 23: / Line 26: @@
 ====Comparison====
-The FlhBc ''Salmonella'' <!--<scene name='User:Fadel_A._Samatey/Workbench/I3DC-1/Flhb_st_aa_aligned/2'>-->3D structure is very similar</scene> to that of ''Aquifex''. 102 alpha carbons align with an RMSD of 1.0 &Aring;. Their FlhB's have 32% sequence identity.
+The FlhBc ''Salmonella'' <!--<scene name='User:Fadel_A._Samatey/Workbench/I3DC-1/Flhb_st_aa_aligned/2'>-->3D structure is very similar to that of ''Aquifex''. 102 alpha carbons align with an RMSD of 1.0 &Aring;. Their FlhB's have 32% sequence identity.
 <scene name='User:Fadel_A._Samatey/FlhBc_I/Flhbc_st_plus_aa/2'>Display both structures</scene>, then click the button below to do a structural alignment.
 <jmol>