2aai: Difference between revisions
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
[[Image:2aai.jpg|left|200px]] | [[Image:2aai.jpg|left|200px]] | ||
'''CRYSTALLOGRAPHIC REFINEMENT OF RICIN TO 2.5 ANGSTROMS''' | {{Structure | ||
|PDB= 2aai |SIZE=350|CAPTION= <scene name='initialview01'>2aai</scene>, resolution 2.5Å | |||
|SITE= | |||
|LIGAND= | |||
|ACTIVITY= [http://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] | |||
|GENE= | |||
}} | |||
'''CRYSTALLOGRAPHIC REFINEMENT OF RICIN TO 2.5 ANGSTROMS''' | |||
==Overview== | ==Overview== | ||
| Line 7: | Line 16: | ||
==About this Structure== | ==About this Structure== | ||
2AAI is a [ | 2AAI is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/ ]. The following page contains interesting information on the relation of 2AAI with [[http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb69_1.html Cholera Toxin]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AAI OCA]. | ||
==Reference== | ==Reference== | ||
Crystallographic refinement of ricin to 2.5 A., Rutenber E, Katzin BJ, Ernst S, Collins EJ, Mlsna D, Ready MP, Robertus JD, Proteins. 1991;10(3):240-50. PMID:[http:// | Crystallographic refinement of ricin to 2.5 A., Rutenber E, Katzin BJ, Ernst S, Collins EJ, Mlsna D, Ready MP, Robertus JD, Proteins. 1991;10(3):240-50. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/1881880 1881880] | ||
[[Category: Cholera Toxin]] | [[Category: Cholera Toxin]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
| Line 26: | Line 35: | ||
[[Category: glycosidase]] | [[Category: glycosidase]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:47:27 2008'' | ||
Revision as of 16:47, 20 March 2008
| |||||||
| , resolution 2.5Å | |||||||
|---|---|---|---|---|---|---|---|
| Activity: | rRNA N-glycosylase, with EC number 3.2.2.22 | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
CRYSTALLOGRAPHIC REFINEMENT OF RICIN TO 2.5 ANGSTROMS
OverviewOverview
The plant cytotoxin ricin consists of two disulfide-linked chains, each of about 30,000 daltons. An initial model based on a 2.8 A MIR electron density map has been refined against 2.5 A data using rounds of hand rebuilding coupled with either a restrained least squares algorithm or molecular dynamics (XPLOR). The last model (9) has an R factor of 21.6% and RMS deviations from standard bond lengths and angles of 0.021 A and 4.67 degrees, respectively. Refinement required several peptide segments in the original model to be adjusted translationally along the electron density. A wide range of lesser changes were also made. The RMS deviation of backbone atoms between the original and model 9 was 1.89 A. Molecular dynamics proved to be a very powerful refinement tool. However, tests showed that it could not replace human intervention in making adjustments such as local translations of the peptide chain. The R factor is not a completely satisfactory indicator of refinement progress; difference Fouriers, when observed carefully, may be a better monitor.
About this StructureAbout this Structure
2AAI is a Single protein structure of sequence from [1]. The following page contains interesting information on the relation of 2AAI with [Cholera Toxin]. Full crystallographic information is available from OCA.
ReferenceReference
Crystallographic refinement of ricin to 2.5 A., Rutenber E, Katzin BJ, Ernst S, Collins EJ, Mlsna D, Ready MP, Robertus JD, Proteins. 1991;10(3):240-50. PMID:1881880
Page seeded by OCA on Thu Mar 20 15:47:27 2008