1y8e: Difference between revisions

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Revision as of 16:19, 20 March 2008

File:1y8e.gif

, resolution 2.2Å

Ligands:

Coordinates:

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VCP:Suramin Complex

OverviewOverview

Suramin is a competitive inhibitor of heparin binding to many proteins, including viral envelope proteins, protein tyrosine phosphatases, and fibroblast growth factors (FGFs). It has been clinically evaluated as a potential therapeutic in treatment of cancers caused by unregulated angiogenesis, triggered by FGFs. Although it has shown clinical promise in treatment of several cancers, suramin has many undesirable side effects. There is currently no experimental structure that reveals the molecular interactions responsible for suramin inhibition of heparin binding, which could be of potential use in structure-assisted design of improved analogues of suramin. We report the structure of suramin, in complex with the heparin-binding site of vaccinia virus complement control protein (VCP), which interacts with heparin in a geometrically similar manner to many FGFs. The larger than anticipated flexibility of suramin manifested in this structure, and other details of VCP-suramin interactions, might provide useful structural information for interpreting interactions of suramin with many proteins.

About this StructureAbout this Structure

1Y8E is a Single protein structure of sequence from Vaccinia virus. Full crystallographic information is available from OCA.

ReferenceReference

Structural basis for antagonism by suramin of heparin binding to vaccinia complement protein., Ganesh VK, Muthuvel SK, Smith SA, Kotwal GJ, Murthy KH, Biochemistry. 2005 Aug 16;44(32):10757-65. PMID:16086578

Page seeded by OCA on Thu Mar 20 15:19:40 2008

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA, Eric Martz

@@ Line 1: / Line 1: @@
-[[Image:1y8e.gif|left|200px]]<br /><applet load="1y8e" size="350" color="white" frame="true" align="right" spinBox="true"
+[[Image:1y8e.gif|left|200px]]
-caption="1y8e, resolution 2.2&Aring;" />
-'''VCP:Suramin Complex'''<br />
+ {{Structure
+|PDB= 1y8e |SIZE=350|CAPTION= <scene name='initialview01'>1y8e</scene>, resolution 2.2&Aring;
+|SITE=
+|LIGAND= <scene name='pdbligand=SVR:8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC ACID'>SVR</scene>
+|ACTIVITY=
+|GENE=
+}}
+'''VCP:Suramin Complex'''
 ==Overview==
@@ Line 7: / Line 16: @@
 ==About this Structure==
-Y8E is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Vaccinia_virus Vaccinia virus] with <scene name='pdbligand=SVR:'>SVR</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y8E OCA].
+Y8E is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vaccinia_virus Vaccinia virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y8E OCA].
 ==Reference==
-Structural basis for antagonism by suramin of heparin binding to vaccinia complement protein., Ganesh VK, Muthuvel SK, Smith SA, Kotwal GJ, Murthy KH, Biochemistry. 2005 Aug 16;44(32):10757-65. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16086578 16086578]
+Structural basis for antagonism by suramin of heparin binding to vaccinia complement protein., Ganesh VK, Muthuvel SK, Smith SA, Kotwal GJ, Murthy KH, Biochemistry. 2005 Aug 16;44(32):10757-65. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16086578 16086578]
 [[Category: Single protein]]
 [[Category: Vaccinia virus]]
@@ Line 21: / Line 30: @@
 [[Category: beta barrel]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:02:45 2008''
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:19:40 2008''