1vwl: Difference between revisions
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[[Image:1vwl.gif|left|200px]] | [[Image:1vwl.gif|left|200px]] | ||
'''STREPTAVIDIN-CYCLO-[5-S-VALERAMIDE-HPQGPPC]K-NH2, PH 3.5, I222 COMPLEX''' | {{Structure | ||
|PDB= 1vwl |SIZE=350|CAPTION= <scene name='initialview01'>1vwl</scene>, resolution 1.45Å | |||
|SITE= | |||
|LIGAND= <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene> and <scene name='pdbligand=LEA:LEVULINIC ACID'>LEA</scene> | |||
|ACTIVITY= | |||
|GENE= | |||
}} | |||
'''STREPTAVIDIN-CYCLO-[5-S-VALERAMIDE-HPQGPPC]K-NH2, PH 3.5, I222 COMPLEX''' | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
1VWL is a [ | 1VWL is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bothrops_insularis Bothrops insularis] and [http://en.wikipedia.org/wiki/Streptomyces_avidinii Streptomyces avidinii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VWL OCA]. | ||
==Reference== | ==Reference== | ||
In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0., Katz BA, Cass RT, J Biol Chem. 1997 May 16;272(20):13220-8. PMID:[http:// | In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0., Katz BA, Cass RT, J Biol Chem. 1997 May 16;272(20):13220-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9148939 9148939] | ||
[[Category: Bothrops insularis]] | [[Category: Bothrops insularis]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: linear thioether-containing peptide engineered]] | [[Category: linear thioether-containing peptide engineered]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:49:29 2008'' | ||
Revision as of 15:49, 20 March 2008
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| Coordinates: | save as pdb, mmCIF, xml | ||||||
STREPTAVIDIN-CYCLO-[5-S-VALERAMIDE-HPQGPPC]K-NH2, PH 3.5, I222 COMPLEX
OverviewOverview
The pH dependences of the affinities for streptavidin of linear and cyclic peptide ligands containing the HPQ sequence discovered by phage display were determined by plasmon resonance measurements. At pH values ranging from 3.0 to 9.0, the Kd values for Ac-AEFSHPQNTIEGRK-NH2, cyclo-Ac-AE[CHPQGPPC]IEGRK-NH2, and cyclo-Ac-AE[CHPQFC]IEGRK-NH2, were determined by competition, and those for cyclo-[5-S-valeramide-HPQGPPC]K-NH2 were determined directly by equilibrium affinity measurements. The Kd values of the ligands increase by an average factor of 3.0 +/- 0.8 per decrease in pH unit between pH approximately 4.5 and pH approximately 6.3. Below pH approximately 4.5 there is a smaller increase in Kd values, and above pH approximately 6.3 the Kd values become relatively pH-independent. We determined the crystal structures of complexes of streptavidin with cyclo-[5-S-valeramide-HPQGPPC]K-NH2 at pH 1.5, 2.5, 3.0, and 3.5, with cyclo-Ac-[CHPQFC]-NH2 at pH 2.0, 3.0, 3.6, 4.2, 4.8, and 11.8, with cyclo-Ac-[CHPQGPPC]-NH2 at pH 2.5, 2.9, and 3.7, and with FSHPQNT at pH 4.0 and compared the structures with one another and with those previously determined at other pH values. At pH values from 3.0 to 11.8, the electron density for the peptide His side chain is strong, flat, and well defined. A hydrogen bond between the Ndelta1 atom of the His and the peptide Gln amide group indicates the His of the bound peptide in the crystals is uncharged at pH >/= 3.0. By determining selected structures in two different space groups, I222 with two crystallographically inequivalent ligand sites and I4122 with one site, we show that below pH approximately 3.0, the pKa of the bound peptide His in the crystals is influenced by crystal packing interactions. The presence of the Ndelta1His-NGln hydrogen bond along with pH dependences of the peptide affinities suggest that deprotonation of the peptide His is required for high affinity binding of HPQ-containing peptides to streptavidin both in the crystals and in solution.
About this StructureAbout this Structure
1VWL is a Single protein structure of sequence from Bothrops insularis and Streptomyces avidinii. Full crystallographic information is available from OCA.
ReferenceReference
In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0., Katz BA, Cass RT, J Biol Chem. 1997 May 16;272(20):13220-8. PMID:9148939
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