1vk5: Difference between revisions

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Revision as of 15:46, 20 March 2008

File:1vk5.gif

, resolution 1.604Å

Sites:

, , , , , , and

Ligands:

, and

Gene:

At3g22680 (Arabidopsis thaliana)

Coordinates:

save as pdb, mmCIF, xml

X-ray Structure of Gene Product from Arabidopsis Thaliana At3g22680

OverviewOverview

The gene product of At3g22680 from Arabidopsis thaliana codes for a protein of unknown function. The crystal structure of the At3g22680 gene product was determined by multiple-wavelength anomalous diffraction and refined to an R factor of 16.0% (Rfree = 18.4%) at 1.60 A resolution. The refined structure shows one monomer in the asymmetric unit, with one molecule of the non-denaturing detergent CHAPS {3-[(3-cholamidopropyl)dimethylammonio]-1-propane sulfonate} tightly bound. Protein At3g22680 shows no structural homology to any other known proteins and represents a new fold in protein conformation space.

About this StructureAbout this Structure

1VK5 is a Single protein structure of sequence from Arabidopsis thaliana. Full crystallographic information is available from OCA.

ReferenceReference

Structure at 1.6 A resolution of the protein from gene locus At3g22680 from Arabidopsis thaliana., Allard ST, Bingman CA, Johnson KA, Wesenberg GE, Bitto E, Jeon WB, Phillips GN Jr, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Jul 1;61(Pt, 7):647-50. Epub 2005 Jun 30. PMID:16511118

Page seeded by OCA on Thu Mar 20 14:46:42 2008

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1vk5.gif|left|200px]]<br /><applet load="1vk5" size="350" color="white" frame="true" align="right" spinBox="true"
+[[Image:1vk5.gif|left|200px]]
-caption="1vk5, resolution 1.604&Aring;" />
-'''X-ray Structure of Gene Product from Arabidopsis Thaliana At3g22680'''<br />
+ {{Structure
+|PDB= 1vk5 |SIZE=350|CAPTION= <scene name='initialview01'>1vk5</scene>, resolution 1.604&Aring;
+|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+A+300'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+A+301'>AC2</scene>, <scene name='pdbsite=AC3:So4+Binding+Site+For+Residue+A+302'>AC3</scene>, <scene name='pdbsite=AC4:Cps+Binding+Site+For+Residue+A+200'>AC4</scene>, <scene name='pdbsite=AC5:Edo+Binding+Site+For+Residue+A+401'>AC5</scene>, <scene name='pdbsite=AC6:Edo+Binding+Site+For+Residue+A+402'>AC6</scene>, <scene name='pdbsite=AC7:Edo+Binding+Site+For+Residue+A+403'>AC7</scene> and <scene name='pdbsite=AC8:Edo+Binding+Site+For+Residue+A+404'>AC8</scene>
+|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene> and <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>
+|ACTIVITY=
+|GENE= At3g22680 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])
+}}
+'''X-ray Structure of Gene Product from Arabidopsis Thaliana At3g22680'''
 ==Overview==
@@ Line 7: / Line 16: @@
 ==About this Structure==
-VK5 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana] with <scene name='pdbligand=SO4:'>SO4</scene>, <scene name='pdbligand=CPS:'>CPS</scene> and <scene name='pdbligand=EDO:'>EDO</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+A+300'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+A+301'>AC2</scene>, <scene name='pdbsite=AC3:So4+Binding+Site+For+Residue+A+302'>AC3</scene>, <scene name='pdbsite=AC4:Cps+Binding+Site+For+Residue+A+200'>AC4</scene>, <scene name='pdbsite=AC5:Edo+Binding+Site+For+Residue+A+401'>AC5</scene>, <scene name='pdbsite=AC6:Edo+Binding+Site+For+Residue+A+402'>AC6</scene>, <scene name='pdbsite=AC7:Edo+Binding+Site+For+Residue+A+403'>AC7</scene> and <scene name='pdbsite=AC8:Edo+Binding+Site+For+Residue+A+404'>AC8</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VK5 OCA].
+VK5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VK5 OCA].
 ==Reference==
-Structure at 1.6 A resolution of the protein from gene locus At3g22680 from Arabidopsis thaliana., Allard ST, Bingman CA, Johnson KA, Wesenberg GE, Bitto E, Jeon WB, Phillips GN Jr, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Jul 1;61(Pt, 7):647-50. Epub 2005 Jun 30. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16511118 16511118]
+Structure at 1.6 A resolution of the protein from gene locus At3g22680 from Arabidopsis thaliana., Allard ST, Bingman CA, Johnson KA, Wesenberg GE, Bitto E, Jeon WB, Phillips GN Jr, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Jul 1;61(Pt, 7):647-50. Epub 2005 Jun 30. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16511118 16511118]
 [[Category: Arabidopsis thaliana]]
 [[Category: Single protein]]
@@ Line 23: / Line 32: @@
 [[Category: EDO]]
 [[Category: SO4]]
-[[Category: center for eukaryotic structural genomics]]
+[[Category: center for eukaryotic structural genomic]]
 [[Category: cesg]]
 [[Category: protein structure initiative]]
 [[Category: psi]]
-[[Category: structural genomics]]
+[[Category: structural genomic]]
 [[Category: unknown function]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:36:11 2008''
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:46:42 2008''