1prc: Difference between revisions

Revision as of 14:28, 20 March 2008

, resolution 2.3Å

Ligands:

, , , , , , , , and

Coordinates:

CRYSTALLOGRAPHIC REFINEMENT AT 2.3 ANGSTROMS RESOLUTION AND REFINED MODEL OF THE PHOTOSYNTHETIC REACTION CENTER FROM RHODOPSEUDOMONAS VIRIDIS

OverviewOverview

The atomic model of the photosynthetic reaction centre from the purple bacterium Rhodopseudomonas viridis has been refined to an R-value of 0.193 at 2.3 A resolution. The refined model contains 10,288 non-hydrogen atoms; 10,045 of these have well defined electron density. A Luzzati-plot indicates an average co-ordinate error of 0.26 A. During refinement, the positions of a partially ordered carotenoid, a unibiquinone in the partially occupied QB site, a detergent molecule, seven putative sulphate ions, and 201 water molecules were found. More than half of these waters are bound at interfaces between protein subunits and therefore contribute significantly to subunit interactions. Water molecules also play important structural and probably functional roles in the environment of some of the cofactors. Two water molecules form hydrogen bonds to the accessory bacteriochlorophylls and to the protein in the vicinity of the special pair of bacteriophylls, the primary electron donor. A group of about 10 water molecules is bound near the binding site of the secondary quinone QB. These waters are likely to participate in the transfer of protons to the doubly reduced QB.

About this StructureAbout this Structure

1PRC is a Protein complex structure of sequences from Blastochloris viridis. The following page contains interesting information on the relation of 1PRC with [Photosystem I]. Full crystallographic information is available from OCA.

ReferenceReference

Crystallographic refinement at 2.3 A resolution and refined model of the photosynthetic reaction centre from Rhodopseudomonas viridis., Deisenhofer J, Epp O, Sinning I, Michel H, J Mol Biol. 1995 Feb 24;246(3):429-57. PMID:7877166

Page seeded by OCA on Thu Mar 20 13:28:00 2008

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1prc.jpg|left|200px]]<br /><applet load="1prc" size="350" color="white" frame="true" align="right" spinBox="true"
+[[Image:1prc.jpg|left|200px]]
-caption="1prc, resolution 2.3&Aring;" />
-'''CRYSTALLOGRAPHIC REFINEMENT AT 2.3 ANGSTROMS RESOLUTION AND REFINED MODEL OF THE PHOTOSYNTHETIC REACTION CENTER FROM RHODOPSEUDOMONAS VIRIDIS'''<br />
+ {{Structure
+|PDB= 1prc |SIZE=350|CAPTION= <scene name='initialview01'>1prc</scene>, resolution 2.3&Aring;
+|SITE=
+|LIGAND= <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=FOR:FORMYL+GROUP'>FOR</scene>, <scene name='pdbligand=BCB:BACTERIOCHLOROPHYLL+B'>BCB</scene>, <scene name='pdbligand=BPB:BACTERIOPHEOPHYTIN+B'>BPB</scene>, <scene name='pdbligand=MQ7:MENAQUINONE-7'>MQ7</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NS1:DIHYDRO-NEUROSPORENE'>NS1</scene>, <scene name='pdbligand=UQ1:UBIQUINONE-1'>UQ1</scene> and <scene name='pdbligand=LDA:LAURYL DIMETHYLAMINE-N-OXIDE'>LDA</scene>
+|ACTIVITY=
+|GENE=
+}}
+'''CRYSTALLOGRAPHIC REFINEMENT AT 2.3 ANGSTROMS RESOLUTION AND REFINED MODEL OF THE PHOTOSYNTHETIC REACTION CENTER FROM RHODOPSEUDOMONAS VIRIDIS'''
 ==Overview==
@@ Line 7: / Line 16: @@
 ==About this Structure==
-PRC is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Blastochloris_viridis Blastochloris viridis] with <scene name='pdbligand=FE:'>FE</scene>, <scene name='pdbligand=SO4:'>SO4</scene>, <scene name='pdbligand=FOR:'>FOR</scene>, <scene name='pdbligand=BCB:'>BCB</scene>, <scene name='pdbligand=BPB:'>BPB</scene>, <scene name='pdbligand=MQ7:'>MQ7</scene>, <scene name='pdbligand=HEM:'>HEM</scene>, <scene name='pdbligand=NS1:'>NS1</scene>, <scene name='pdbligand=UQ1:'>UQ1</scene> and <scene name='pdbligand=LDA:'>LDA</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. The following page contains interesting information on the relation of 1PRC with [[http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb22_1.html Photosystem I]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PRC OCA].
+PRC is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Blastochloris_viridis Blastochloris viridis]. The following page contains interesting information on the relation of 1PRC with [[http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb22_1.html Photosystem I]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PRC OCA].
 ==Reference==
-Crystallographic refinement at 2.3 A resolution and refined model of the photosynthetic reaction centre from Rhodopseudomonas viridis., Deisenhofer J, Epp O, Sinning I, Michel H, J Mol Biol. 1995 Feb 24;246(3):429-57. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=7877166 7877166]
+Crystallographic refinement at 2.3 A resolution and refined model of the photosynthetic reaction centre from Rhodopseudomonas viridis., Deisenhofer J, Epp O, Sinning I, Michel H, J Mol Biol. 1995 Feb 24;246(3):429-57. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/7877166 7877166]
 [[Category: Blastochloris viridis]]
 [[Category: Photosystem I]]
@@ Line 31: / Line 40: @@
 [[Category: photosynthetic reaction center]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 14:31:43 2008''
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 13:28:00 2008''