1mbf: Difference between revisions

Revision as of 13:41, 20 March 2008

Ligands:

Coordinates:

MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1

OverviewOverview

The DNA-binding domain of c-Myb consists of three imperfect tandem repeats (R1, R2 and R3). The three repeats have similar overall architectures, each containing a helix-turn-helix variation motif. The three conserved tryptophans in each repeat participate in forming a hydrophobic core. Comparison of the three repeat structures indicated that cavities are found in the hydrophobic core of R2, which is thermally unstable. On complexation with DNA, the orientations of R2 and R3 are fixed by tight binding and their conformations are slightly changed. No significant changes occur in the chemical shifts of R1 consistent with its loose interaction with DNA.

About this StructureAbout this Structure

1MBF is a Single protein structure of sequence from Mus musculus. Full crystallographic information is available from OCA.

ReferenceReference

Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb., Ogata K, Morikawa S, Nakamura H, Hojo H, Yoshimura S, Zhang R, Aimoto S, Ametani Y, Hirata Z, Sarai A, et al., Nat Struct Biol. 1995 Apr;2(4):309-20. PMID:7796266

Page seeded by OCA on Thu Mar 20 12:41:24 2008

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1mbf.jpg|left|200px]]<br /><applet load="1mbf" size="350" color="white" frame="true" align="right" spinBox="true"
+[[Image:1mbf.jpg|left|200px]]
-caption="1mbf" />
-'''MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1'''<br />
+ {{Structure
+|PDB= 1mbf |SIZE=350|CAPTION= <scene name='initialview01'>1mbf</scene>
+|SITE=
+|LIGAND= <scene name='pdbligand=NH2:AMINO GROUP'>NH2</scene>
+|ACTIVITY=
+|GENE=
+}}
+'''MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1'''
 ==Overview==
@@ Line 7: / Line 16: @@
 ==About this Structure==
-MBF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] with <scene name='pdbligand=NH2:'>NH2</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MBF OCA].
+MBF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MBF OCA].
 ==Reference==
-Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb., Ogata K, Morikawa S, Nakamura H, Hojo H, Yoshimura S, Zhang R, Aimoto S, Ametani Y, Hirata Z, Sarai A, et al., Nat Struct Biol. 1995 Apr;2(4):309-20. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=7796266 7796266]
+Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb., Ogata K, Morikawa S, Nakamura H, Hojo H, Yoshimura S, Zhang R, Aimoto S, Ametani Y, Hirata Z, Sarai A, et al., Nat Struct Biol. 1995 Apr;2(4):309-20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/7796266 7796266]
 [[Category: Mus musculus]]
 [[Category: Single protein]]
@@ Line 28: / Line 37: @@
 [[Category: protooncogene product]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 13:53:37 2008''
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:41:24 2008''