Sandbox reserved 392: Difference between revisions
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<Structure load='1M4D' size='500' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' /> | <Structure load='1M4D' size='500' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' /> | ||
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This molecule represents the <scene name='Sandbox_reserved_392/Color_protein_secondarystruct/1'>alpha helices and beta strands</scene>. The alpha helices are represented with pink arrows and the beta strands are represented with yellow arrows. This molecule has approximately four alpha helices and two beta strands. The structure of the alpha and beta sheets in this structure represents the GNAT fold. The GNAT fold is almost completely catalyzed by CoA- dependent transfer of an acyl group to an exposed amino acid group. This interaction is the basis for the study. This shows how the acetylation of Mycothiol is occurring and why. | This molecule represents the <scene name='Sandbox_reserved_392/Color_protein_secondarystruct/1'>alpha helices and beta strands</scene>. The alpha helices are represented with pink arrows and the beta strands are represented with yellow arrows. This molecule has approximately four alpha helices and two beta strands. The structure of the alpha and beta sheets in this structure represents the GNAT fold. The GNAT fold is almost completely catalyzed by CoA- dependent transfer of an acyl group to an exposed amino acid group. This interaction is the basis for the study. This shows how the acetylation of Mycothiol is occurring and why. | ||
The <scene name='Sandbox_reserved_392/Ligands/1'>ligands</scene> displayed in the molecule to the right are Coenzyme A, Tobramycin and 3'-Phosphate-Adenosine-5'-Diphosphate. <scene name='Sandbox_reserved_392/Coa/2'>Coenzyme A</scene> (CoA) is a coenzyme that synthesizes and oxidizes fatty acids. <scene name='Sandbox_reserved_392/Pap/ | The <scene name='Sandbox_reserved_392/Ligands/1'>ligands</scene> displayed in the molecule to the right are Coenzyme A, Tobramycin and 3'-Phosphate-Adenosine-5'-Diphosphate. <scene name='Sandbox_reserved_392/Coa/2'>Coenzyme A</scene> (CoA) is a coenzyme that synthesizes and oxidizes fatty acids. <scene name='Sandbox_reserved_392/Pap/2'>Pap's</scene> IUPAC name is [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methylphosphono hydrogen phosphate. The ligands are held together by the hydrogen bonds created by alpha and beta sheets. The Protein in this molecule is represented as a <scene name='Sandbox_reserved_392/Protein_as_a_dimer/1'>dimer</scene>. A dimer is a chemical structure formed from two subunits. The dimer is constructed by connecting two subunits along their axis so that all four modules contribute to the structure. | ||
This molecule displayes the <scene name='Sandbox_reserved_392/Ligand_bound_to_protein/1'>protein bound to the ligand CoA</scene>. The red molecules represent an anionic or negatively charged interaction. The dark blue molecules emphasize the cationic or positively charged interactions. The cationic and anionic interactions are contributed to arginine, aspartic acid, or glycine amino acids. The light blue molecules represent histidine, which is a basic amino acid. The difference in the charges displayed here contribute to the stability of the molecule. Since the charges are different it allows the molecules to be attracted to the opposite charge holding the molecule in a stable position. | This molecule displayes the <scene name='Sandbox_reserved_392/Ligand_bound_to_protein/1'>protein bound to the ligand CoA</scene>. The red molecules represent an anionic or negatively charged interaction. The dark blue molecules emphasize the cationic or positively charged interactions. The cationic and anionic interactions are contributed to arginine, aspartic acid, or glycine amino acids. The light blue molecules represent histidine, which is a basic amino acid. The difference in the charges displayed here contribute to the stability of the molecule. Since the charges are different it allows the molecules to be attracted to the opposite charge holding the molecule in a stable position. | ||