1czb: Difference between revisions
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
[[Image:1czb.gif|left|200px]] | [[Image:1czb.gif|left|200px]] | ||
'''ATOMIC RESOLUTION ASV INTEGRASE CORE DOMAIN FROM HEPES''' | {{Structure | ||
|PDB= 1czb |SIZE=350|CAPTION= <scene name='initialview01'>1czb</scene>, resolution 1.06Å | |||
|SITE= | |||
|LIGAND= <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID'>EPE</scene> | |||
|ACTIVITY= | |||
|GENE= | |||
}} | |||
'''ATOMIC RESOLUTION ASV INTEGRASE CORE DOMAIN FROM HEPES''' | |||
==Overview== | ==Overview== | ||
| Line 7: | Line 16: | ||
==About this Structure== | ==About this Structure== | ||
1CZB is a [ | 1CZB is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Avian_sarcoma_virus Avian sarcoma virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CZB OCA]. | ||
==Reference== | ==Reference== | ||
Atomic resolution structures of the core domain of avian sarcoma virus integrase and its D64N mutant., Lubkowski J, Dauter Z, Yang F, Alexandratos J, Merkel G, Skalka AM, Wlodawer A, Biochemistry. 1999 Oct 12;38(41):13512-22. PMID:[http:// | Atomic resolution structures of the core domain of avian sarcoma virus integrase and its D64N mutant., Lubkowski J, Dauter Z, Yang F, Alexandratos J, Merkel G, Skalka AM, Wlodawer A, Biochemistry. 1999 Oct 12;38(41):13512-22. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10521258 10521258] | ||
[[Category: Avian sarcoma virus]] | [[Category: Avian sarcoma virus]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
| Line 21: | Line 30: | ||
[[Category: Yang, F.]] | [[Category: Yang, F.]] | ||
[[Category: EPE]] | [[Category: EPE]] | ||
[[Category: mixed beta-sheet surrounded by alpha- | [[Category: mixed beta-sheet surrounded by alpha-helice]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 10:30:44 2008'' | ||
Revision as of 11:30, 20 March 2008
| |||||||
| , resolution 1.06Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
ATOMIC RESOLUTION ASV INTEGRASE CORE DOMAIN FROM HEPES
OverviewOverview
Six crystal structures of the core domain of integrase (IN) from avian sarcoma virus (ASV) and its active-site derivative containing an Asp64 --> Asn substitution have been solved at atomic resolution ranging 1.02-1.42 A. The high-quality data provide new structural information about the active site of the enzyme and clarify previous inconsistencies in the description of this fragment. The very high resolution of the data and excellent quality of the refined models explain the dynamic properties of IN and the multiple conformations of its disordered residues. They also allow an accurate description of the solvent structure and help to locate other molecules bound to the enzyme. A detailed analysis of the flexible active-site region, in particular the loop formed by residues 144-154, suggests conformational changes which may be associated with substrate binding and enzymatic activity. The pH-dependent conformational changes of the active-site loop correlates with the pH vs activity profile observed for ASV IN.
About this StructureAbout this Structure
1CZB is a Single protein structure of sequence from Avian sarcoma virus. Full crystallographic information is available from OCA.
ReferenceReference
Atomic resolution structures of the core domain of avian sarcoma virus integrase and its D64N mutant., Lubkowski J, Dauter Z, Yang F, Alexandratos J, Merkel G, Skalka AM, Wlodawer A, Biochemistry. 1999 Oct 12;38(41):13512-22. PMID:10521258
Page seeded by OCA on Thu Mar 20 10:30:44 2008