Quality assessment for molecular models: Difference between revisions
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**Protein backbone conformation (Ramachandran plot). | **Protein backbone conformation (Ramachandran plot). | ||
**Protein sicechain conformations (rotamers). | **Protein sicechain conformations (rotamers). | ||
:The above analyses are available from [ | :The above analyses are available from [[MolProbity]], or from the [http://swift.cmbi.ru.nl/servers/html/index.html WHAT_IF server] where you can upload PDB files, or, for published PDB files, from the [http://swift.cmbi.ru.nl/gv/pdbreport/ PDBREPORT database]. | ||
*All-atom contacts (clash score, Asn/Gln/His flips), analyses available from [ | *All-atom contacts (clash score, Asn/Gln/His flips), analyses available from [[MolProbity]]. | ||
*Underpacking (holes in the core). Analysis available from RosettaHoles2<ref>PMID: 20665689</ref> (not available as a server). | *Underpacking (holes in the core). Analysis available from RosettaHoles2<ref>PMID: 20665689</ref> (not available as a server). | ||