1tff: Difference between revisions

Revision as of 16:13, 21 February 2008

Structure of Otubain-2

OverviewOverview

Ubiquitylation, the modification of cellular proteins by the covalent attachment of ubiquitin, is critical for diverse biological processes including cell cycle progression, signal transduction and stress response. This process can be reversed and regulated by a group of proteases called deubiquitylating enzymes (DUBs). Otubains are a recently identified family of DUBs that belong to the ovarian tumour (OTU) superfamily of proteins. Here, we report the first crystal structure of an OTU superfamily protein, otubain 2, at 2.1 A resolution and propose a model for otubain-ubiquitin binding on the basis of other DUB structures. Although otubain 2 is a member of the cysteine protease superfamily of folds, its crystal structure shows a novel fold for DUBs. Moreover, the active-site cleft is sterically occluded by a novel loop conformation resulting in an oxyanion hole, which consists uniquely of backbone amides, rather than the composite backbone/side-chain substructures seen in other DUBs and cysteine proteases. Furthermore, the residues that orient and stabilize the active-site histidine of otubain 2 are different from other cysteine proteases. This reorganization of the active-site topology provides a possible explanation for the low turnover and substrate specificity of the otubains.

About this StructureAbout this Structure

1TFF is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.

ReferenceReference

Crystal structure of human otubain 2., Nanao MH, Tcherniuk SO, Chroboczek J, Dideberg O, Dessen A, Balakirev MY, EMBO Rep. 2004 Aug;5(8):783-8. Epub 2004 Jul 16. PMID:15258613

Page seeded by OCA on Thu Feb 21 15:13:04 2008

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OCA

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 ==Overview==
-Ubiquitylation, the modification of cellular proteins by the covalent, attachment of ubiquitin, is critical for diverse biological processes, including cell cycle progression, signal transduction and stress response., This process can be reversed and regulated by a group of proteases called, deubiquitylating enzymes (DUBs). Otubains are a recently identified family, of DUBs that belong to the ovarian tumour (OTU) superfamily of proteins., Here, we report the first crystal structure of an OTU superfamily protein, otubain 2, at 2.1 A resolution and propose a model for otubain-ubiquitin, binding on the basis of other DUB structures. Although otubain 2 is a, member of the cysteine protease superfamily of folds, its crystal, structure shows a novel fold for DUBs. Moreover, the active-site cleft is, sterically occluded by a novel loop conformation resulting in an oxyanion, hole, which consists uniquely of backbone amides, rather than the, composite backbone/side-chain substructures seen in other DUBs and, cysteine proteases. Furthermore, the residues that orient and stabilize, the active-site histidine of otubain 2 are different from other cysteine, proteases. This reorganization of the active-site topology provides a, possible explanation for the low turnover and substrate specificity of the, otubains.
+Ubiquitylation, the modification of cellular proteins by the covalent attachment of ubiquitin, is critical for diverse biological processes including cell cycle progression, signal transduction and stress response. This process can be reversed and regulated by a group of proteases called deubiquitylating enzymes (DUBs). Otubains are a recently identified family of DUBs that belong to the ovarian tumour (OTU) superfamily of proteins. Here, we report the first crystal structure of an OTU superfamily protein, otubain 2, at 2.1 A resolution and propose a model for otubain-ubiquitin binding on the basis of other DUB structures. Although otubain 2 is a member of the cysteine protease superfamily of folds, its crystal structure shows a novel fold for DUBs. Moreover, the active-site cleft is sterically occluded by a novel loop conformation resulting in an oxyanion hole, which consists uniquely of backbone amides, rather than the composite backbone/side-chain substructures seen in other DUBs and cysteine proteases. Furthermore, the residues that orient and stabilize the active-site histidine of otubain 2 are different from other cysteine proteases. This reorganization of the active-site topology provides a possible explanation for the low turnover and substrate specificity of the otubains.
 ==About this Structure==
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 [[Category: Homo sapiens]]
 [[Category: Single protein]]
-[[Category: Balakirev, M.Y.]]
+[[Category: Balakirev, M Y.]]
 [[Category: Chroboczek, J.]]
 [[Category: Dessen, A.]]
 [[Category: Dideberg, O.]]
-[[Category: Nanao, M.H.]]
+[[Category: Nanao, M H.]]
-[[Category: Tcherniuk, S.O.]]
+[[Category: Tcherniuk, S O.]]
 [[Category: hydrolase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Feb 15 16:56:46 2008''
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:13:04 2008''