Thermal motion of peptide: Difference between revisions
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* <scene name='Thermal_motion_of_peptide/Nmr_15_models_alpha_helix/1'>Sticks</scene> (all atoms, sequence GPEASAFTKMVENAKKI). | * <scene name='Thermal_motion_of_peptide/Nmr_15_models_alpha_helix/1'>Sticks</scene> (all atoms, sequence GPEASAFTKMVENAKKI). | ||
* <scene name='Thermal_motion_of_peptide/Nmr_15_models_alpha_helix/3'>Spacefilling</scene> (all atoms). | * <scene name='Thermal_motion_of_peptide/Nmr_15_models_alpha_helix/3'>Spacefilling</scene> (all atoms). | ||
* <scene name='Thermal_motion_of_peptide/Nmr_15_models_alpha_helix/5'>15 models</scene> (main chain and beta carbons, not animated). | |||
* <scene name='Thermal_motion_of_peptide/Nmr_15_models_alpha_helix/4'>15 models</scene> (all atoms, not animated). | * <scene name='Thermal_motion_of_peptide/Nmr_15_models_alpha_helix/4'>15 models</scene> (all atoms, not animated). | ||
==Technical== | ==Technical== | ||
Raul E. Cachau kindly contributed this molecular dynamics simulation of a peptide alpha helix, which he calculated ca. 1995. Permission was given for public display and redistribution, provided the author is credited. The file is in XYZ format, and contains 100 models. Each model contains 75 atoms. Hydrogens are missing except for those on the main chain nitrogens. The file is [[Image:Cachau-peptide-MD-simulation-ca1995.xyz.gz]]. | Raul E. Cachau kindly contributed this molecular dynamics simulation of a peptide alpha helix, which he calculated ca. 1995. Permission was given for public display and redistribution, provided the author is credited. The file is in XYZ format, and contains 100 models. Each model contains 75 atoms. Hydrogens are missing except for those on the main chain nitrogens. The file is [[Image:Cachau-peptide-MD-simulation-ca1995.xyz.gz]]. | ||